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OR4D1 (olfactory receptor family 4 subfamily D member 1)

Identity

Alias_namesOR4D3
olfactory receptor, family 4, subfamily D, member 1
Alias_symbol (synonym)TPCR16
Other aliasOR17-23
OR4D4P
HGNC (Hugo) OR4D1
LocusID (NCBI) 26689
Atlas_Id 71316
Location 17q22  [Link to chromosome band 17q22]
Location_base_pair Starts at 58155154 and ends at 58156086 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR4D1   8293
Cards
Entrez_Gene (NCBI)OR4D1  26689  olfactory receptor family 4 subfamily D member 1
AliasesOR17-23; OR4D3; OR4D4P; TPCR16
GeneCards (Weizmann)OR4D1
Ensembl hg19 (Hinxton)ENSG00000141194 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000141194 [Gene_View]  chr17:58155154-58156086 [Contig_View]  OR4D1 [Vega]
ICGC DataPortalENSG00000141194
TCGA cBioPortalOR4D1
AceView (NCBI)OR4D1
Genatlas (Paris)OR4D1
WikiGenes26689
SOURCE (Princeton)OR4D1
Genetics Home Reference (NIH)OR4D1
Genomic and cartography
GoldenPath hg38 (UCSC)OR4D1  -     chr17:58155154-58156086 +  17q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR4D1  -     17q22   [Description]    (hg19-Feb_2009)
EnsemblOR4D1 - 17q22 [CytoView hg19]  OR4D1 - 17q22 [CytoView hg38]
Mapping of homologs : NCBIOR4D1 [Mapview hg19]  OR4D1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136589 BC136595 X89670
RefSeq transcript (Entrez)NM_012374
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR4D1
Cluster EST : UnigeneHs.531188 [ NCBI ]
CGAP (NCI)Hs.531188
Alternative Splicing GalleryENSG00000141194
Gene ExpressionOR4D1 [ NCBI-GEO ]   OR4D1 [ EBI - ARRAY_EXPRESS ]   OR4D1 [ SEEK ]   OR4D1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR4D1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26689
GTEX Portal (Tissue expression)OR4D1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15615   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15615  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15615
Splice isoforms : SwissVarQ15615
PhosPhoSitePlusQ15615
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR4D1
DMDM Disease mutations26689
Blocks (Seattle)OR4D1
SuperfamilyQ15615
Human Protein AtlasENSG00000141194
Peptide AtlasQ15615
HPRD14965
IPIIPI00018699   IPI00896444   
Protein Interaction databases
DIP (DOE-UCLA)Q15615
IntAct (EBI)Q15615
FunCoupENSG00000141194
BioGRIDOR4D1
STRING (EMBL)OR4D1
ZODIACOR4D1
Ontologies - Pathways
QuickGOQ15615
Ontology : AmiGOtransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBItransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR4D1
Atlas of Cancer Signalling NetworkOR4D1
Wikipedia pathwaysOR4D1
Orthology - Evolution
OrthoDB26689
GeneTree (enSembl)ENSG00000141194
Phylogenetic Trees/Animal Genes : TreeFamOR4D1
HOVERGENQ15615
HOGENOMQ15615
Homologs : HomoloGeneOR4D1
Homology/Alignments : Family Browser (UCSC)OR4D1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR4D1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR4D1
dbVarOR4D1
ClinVarOR4D1
1000_GenomesOR4D1 
Exome Variant ServerOR4D1
ExAC (Exome Aggregation Consortium)OR4D1 (select the gene name)
Genetic variants : HAPMAP26689
Genomic Variants (DGV)OR4D1 [DGVbeta]
DECIPHEROR4D1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR4D1 
Mutations
ICGC Data PortalOR4D1 
TCGA Data PortalOR4D1 
Broad Tumor PortalOR4D1
OASIS PortalOR4D1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR4D1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR4D1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR4D1
DgiDB (Drug Gene Interaction Database)OR4D1
DoCM (Curated mutations)OR4D1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR4D1 (select a term)
intoGenOR4D1
Cancer3DOR4D1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR4D1
Genetic Testing Registry OR4D1
NextProtQ15615 [Medical]
TSGene26689
GENETestsOR4D1
Target ValidationOR4D1
Huge Navigator OR4D1 [HugePedia]
snp3D : Map Gene to Disease26689
BioCentury BCIQOR4D1
ClinGenOR4D1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26689
Chemical/Pharm GKB GenePA32267
Clinical trialOR4D1
Miscellaneous
canSAR (ICR)OR4D1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR4D1
EVEXOR4D1
GoPubMedOR4D1
iHOPOR4D1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:33:07 CEST 2017

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