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OR4D11 (olfactory receptor family 4 subfamily D member 11)

Identity

Alias_namesOR4D11P
olfactory receptor, family 4, subfamily D, member 11
Other alias
HGNC (Hugo) OR4D11
LocusID (NCBI) 219986
Atlas_Id 71318
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 59503576 and ends at 59504511 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR4D11   15174
Cards
Entrez_Gene (NCBI)OR4D11  219986  olfactory receptor family 4 subfamily D member 11
AliasesOR4D11P
GeneCards (Weizmann)OR4D11
Ensembl hg19 (Hinxton)ENSG00000176200 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176200 [Gene_View]  chr11:59503576-59504511 [Contig_View]  OR4D11 [Vega]
ICGC DataPortalENSG00000176200
TCGA cBioPortalOR4D11
AceView (NCBI)OR4D11
Genatlas (Paris)OR4D11
WikiGenes219986
SOURCE (Princeton)OR4D11
Genetics Home Reference (NIH)OR4D11
Genomic and cartography
GoldenPath hg38 (UCSC)OR4D11  -     chr11:59503576-59504511 +  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR4D11  -     11q12.1   [Description]    (hg19-Feb_2009)
EnsemblOR4D11 - 11q12.1 [CytoView hg19]  OR4D11 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIOR4D11 [Mapview hg19]  OR4D11 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001004706
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR4D11
Cluster EST : UnigeneHs.553651 [ NCBI ]
CGAP (NCI)Hs.553651
Alternative Splicing GalleryENSG00000176200
Gene ExpressionOR4D11 [ NCBI-GEO ]   OR4D11 [ EBI - ARRAY_EXPRESS ]   OR4D11 [ SEEK ]   OR4D11 [ MEM ]
Gene Expression Viewer (FireBrowse)OR4D11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219986
GTEX Portal (Tissue expression)OR4D11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGI4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGI4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGI4
Splice isoforms : SwissVarQ8NGI4
PhosPhoSitePlusQ8NGI4
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR4D11
DMDM Disease mutations219986
Blocks (Seattle)OR4D11
SuperfamilyQ8NGI4
Human Protein AtlasENSG00000176200
Peptide AtlasQ8NGI4
HPRD17725
IPIIPI00169026   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGI4
IntAct (EBI)Q8NGI4
FunCoupENSG00000176200
BioGRIDOR4D11
STRING (EMBL)OR4D11
ZODIACOR4D11
Ontologies - Pathways
QuickGOQ8NGI4
Ontology : AmiGOtransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBItransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR4D11
Atlas of Cancer Signalling NetworkOR4D11
Wikipedia pathwaysOR4D11
Orthology - Evolution
OrthoDB219986
GeneTree (enSembl)ENSG00000176200
Phylogenetic Trees/Animal Genes : TreeFamOR4D11
HOVERGENQ8NGI4
HOGENOMQ8NGI4
Homologs : HomoloGeneOR4D11
Homology/Alignments : Family Browser (UCSC)OR4D11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR4D11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR4D11
dbVarOR4D11
ClinVarOR4D11
1000_GenomesOR4D11 
Exome Variant ServerOR4D11
ExAC (Exome Aggregation Consortium)OR4D11 (select the gene name)
Genetic variants : HAPMAP219986
Genomic Variants (DGV)OR4D11 [DGVbeta]
DECIPHEROR4D11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR4D11 
Mutations
ICGC Data PortalOR4D11 
TCGA Data PortalOR4D11 
Broad Tumor PortalOR4D11
OASIS PortalOR4D11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR4D11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR4D11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR4D11
DgiDB (Drug Gene Interaction Database)OR4D11
DoCM (Curated mutations)OR4D11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR4D11 (select a term)
intoGenOR4D11
Cancer3DOR4D11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR4D11
Genetic Testing Registry OR4D11
NextProtQ8NGI4 [Medical]
TSGene219986
GENETestsOR4D11
Target ValidationOR4D11
Huge Navigator OR4D11 [HugePedia]
snp3D : Map Gene to Disease219986
BioCentury BCIQOR4D11
ClinGenOR4D11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219986
Chemical/Pharm GKB GenePA32269
Clinical trialOR4D11
Miscellaneous
canSAR (ICR)OR4D11 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR4D11
EVEXOR4D11
GoPubMedOR4D11
iHOPOR4D11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:34:19 CEST 2017

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