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OR4D2 (olfactory receptor, family 4, subfamily D, member 2)

Identity

Alias_namesolfactory receptor, family 4, subfamily D, member 2
Other aliasBC2009
OR17-24
HGNC (Hugo) OR4D2
LocusID (NCBI) 124538
Atlas_Id 71319
Location 17q22  [Link to chromosome band 17q22]
Location_base_pair Starts at 56247017 and ends at 56247940 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR4D2   8294
Cards
Entrez_Gene (NCBI)OR4D2  124538  olfactory receptor, family 4, subfamily D, member 2
AliasesBC2009; OR17-24
GeneCards (Weizmann)OR4D2
Ensembl hg19 (Hinxton)ENSG00000255713 [Gene_View]  chr17:56247017-56247940 [Contig_View]  OR4D2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000255713 [Gene_View]  chr17:56247017-56247940 [Contig_View]  OR4D2 [Vega]
ICGC DataPortalENSG00000255713
TCGA cBioPortalOR4D2
AceView (NCBI)OR4D2
Genatlas (Paris)OR4D2
WikiGenes124538
SOURCE (Princeton)OR4D2
Genetics Home Reference (NIH)OR4D2
Genomic and cartography
GoldenPath hg19 (UCSC)OR4D2  -     chr17:56247017-56247940 +  17q22   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR4D2  -     17q22   [Description]    (hg38-Dec_2013)
EnsemblOR4D2 - 17q22 [CytoView hg19]  OR4D2 - 17q22 [CytoView hg38]
Mapping of homologs : NCBIOR4D2 [Mapview hg19]  OR4D2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF303373 BC141568 BC146583
RefSeq transcript (Entrez)NM_001004707
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)OR4D2
Cluster EST : UnigeneHs.446879 [ NCBI ]
CGAP (NCI)Hs.446879
Alternative Splicing GalleryENSG00000255713
Gene ExpressionOR4D2 [ NCBI-GEO ]   OR4D2 [ EBI - ARRAY_EXPRESS ]   OR4D2 [ SEEK ]   OR4D2 [ MEM ]
Gene Expression Viewer (FireBrowse)OR4D2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)124538
GTEX Portal (Tissue expression)OR4D2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP58180   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP58180  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP58180
Splice isoforms : SwissVarP58180
PhosPhoSitePlusP58180
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR4D2
DMDM Disease mutations124538
Blocks (Seattle)OR4D2
SuperfamilyP58180
Human Protein AtlasENSG00000255713
Peptide AtlasP58180
HPRD14967
IPIIPI00011052   
Protein Interaction databases
DIP (DOE-UCLA)P58180
IntAct (EBI)P58180
FunCoupENSG00000255713
BioGRIDOR4D2
STRING (EMBL)OR4D2
ZODIACOR4D2
Ontologies - Pathways
QuickGOP58180
Ontology : AmiGOtransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBItransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR4D2
Atlas of Cancer Signalling NetworkOR4D2
Wikipedia pathwaysOR4D2
Orthology - Evolution
OrthoDB124538
GeneTree (enSembl)ENSG00000255713
Phylogenetic Trees/Animal Genes : TreeFamOR4D2
HOVERGENP58180
HOGENOMP58180
Homologs : HomoloGeneOR4D2
Homology/Alignments : Family Browser (UCSC)OR4D2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR4D2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR4D2
dbVarOR4D2
ClinVarOR4D2
1000_GenomesOR4D2 
Exome Variant ServerOR4D2
ExAC (Exome Aggregation Consortium)OR4D2 (select the gene name)
Genetic variants : HAPMAP124538
Genomic Variants (DGV)OR4D2 [DGVbeta]
DECIPHER (Syndromes)17:56247017-56247940  ENSG00000255713
CONAN: Copy Number AnalysisOR4D2 
Mutations
ICGC Data PortalOR4D2 
TCGA Data PortalOR4D2 
Broad Tumor PortalOR4D2
OASIS PortalOR4D2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR4D2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR4D2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR4D2
DgiDB (Drug Gene Interaction Database)OR4D2
DoCM (Curated mutations)OR4D2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR4D2 (select a term)
intoGenOR4D2
Cancer3DOR4D2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR4D2
Genetic Testing Registry OR4D2
NextProtP58180 [Medical]
TSGene124538
GENETestsOR4D2
Huge Navigator OR4D2 [HugePedia]
snp3D : Map Gene to Disease124538
BioCentury BCIQOR4D2
ClinGenOR4D2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD124538
Chemical/Pharm GKB GenePA32270
Clinical trialOR4D2
Miscellaneous
canSAR (ICR)OR4D2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR4D2
EVEXOR4D2
GoPubMedOR4D2
iHOPOR4D2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:36:34 CET 2017

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