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OR4D5 (olfactory receptor family 4 subfamily D member 5)

Identity

Alias_namesolfactory receptor, family 4, subfamily D, member 5
Other aliasOR11-276
HGNC (Hugo) OR4D5
LocusID (NCBI) 219875
Atlas_Id 71320
Location 11q24.1  [Link to chromosome band 11q24]
Location_base_pair Starts at 123939617 and ends at 123940573 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR4D5   14852
Cards
Entrez_Gene (NCBI)OR4D5  219875  olfactory receptor family 4 subfamily D member 5
AliasesOR11-276
GeneCards (Weizmann)OR4D5
Ensembl hg19 (Hinxton)ENSG00000171014 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171014 [Gene_View]  chr11:123939617-123940573 [Contig_View]  OR4D5 [Vega]
ICGC DataPortalENSG00000171014
TCGA cBioPortalOR4D5
AceView (NCBI)OR4D5
Genatlas (Paris)OR4D5
WikiGenes219875
SOURCE (Princeton)OR4D5
Genetics Home Reference (NIH)OR4D5
Genomic and cartography
GoldenPath hg38 (UCSC)OR4D5  -     chr11:123939617-123940573 +  11q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR4D5  -     11q24.1   [Description]    (hg19-Feb_2009)
EnsemblOR4D5 - 11q24.1 [CytoView hg19]  OR4D5 - 11q24.1 [CytoView hg38]
Mapping of homologs : NCBIOR4D5 [Mapview hg19]  OR4D5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136943 BC136945
RefSeq transcript (Entrez)NM_001001965
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR4D5
Cluster EST : UnigeneHs.553639 [ NCBI ]
CGAP (NCI)Hs.553639
Alternative Splicing GalleryENSG00000171014
Gene ExpressionOR4D5 [ NCBI-GEO ]   OR4D5 [ EBI - ARRAY_EXPRESS ]   OR4D5 [ SEEK ]   OR4D5 [ MEM ]
Gene Expression Viewer (FireBrowse)OR4D5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219875
GTEX Portal (Tissue expression)OR4D5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGN0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGN0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGN0
Splice isoforms : SwissVarQ8NGN0
PhosPhoSitePlusQ8NGN0
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR4D5
DMDM Disease mutations219875
Blocks (Seattle)OR4D5
SuperfamilyQ8NGN0
Human Protein AtlasENSG00000171014
Peptide AtlasQ8NGN0
HPRD17726
IPIIPI00169065   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGN0
IntAct (EBI)Q8NGN0
FunCoupENSG00000171014
BioGRIDOR4D5
STRING (EMBL)OR4D5
ZODIACOR4D5
Ontologies - Pathways
QuickGOQ8NGN0
Ontology : AmiGOtransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBItransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR4D5
Atlas of Cancer Signalling NetworkOR4D5
Wikipedia pathwaysOR4D5
Orthology - Evolution
OrthoDB219875
GeneTree (enSembl)ENSG00000171014
Phylogenetic Trees/Animal Genes : TreeFamOR4D5
HOVERGENQ8NGN0
HOGENOMQ8NGN0
Homologs : HomoloGeneOR4D5
Homology/Alignments : Family Browser (UCSC)OR4D5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR4D5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR4D5
dbVarOR4D5
ClinVarOR4D5
1000_GenomesOR4D5 
Exome Variant ServerOR4D5
ExAC (Exome Aggregation Consortium)OR4D5 (select the gene name)
Genetic variants : HAPMAP219875
Genomic Variants (DGV)OR4D5 [DGVbeta]
DECIPHEROR4D5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR4D5 
Mutations
ICGC Data PortalOR4D5 
TCGA Data PortalOR4D5 
Broad Tumor PortalOR4D5
OASIS PortalOR4D5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR4D5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR4D5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR4D5
DgiDB (Drug Gene Interaction Database)OR4D5
DoCM (Curated mutations)OR4D5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR4D5 (select a term)
intoGenOR4D5
Cancer3DOR4D5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR4D5
Genetic Testing Registry OR4D5
NextProtQ8NGN0 [Medical]
TSGene219875
GENETestsOR4D5
Target ValidationOR4D5
Huge Navigator OR4D5 [HugePedia]
snp3D : Map Gene to Disease219875
BioCentury BCIQOR4D5
ClinGenOR4D5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219875
Chemical/Pharm GKB GenePA32272
Clinical trialOR4D5
Miscellaneous
canSAR (ICR)OR4D5 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR4D5
EVEXOR4D5
GoPubMedOR4D5
iHOPOR4D5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:34:19 CEST 2017

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