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OR4D6 (olfactory receptor family 4 subfamily D member 6)

Identity

Alias (NCBI)OR11-250
HGNC (Hugo) OR4D6
HGNC Previous nameolfactory receptor, family 4, subfamily D, member 6
LocusID (NCBI) 219983
Atlas_Id 71321
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 59456961 and ends at 59457905 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)OR4D6   15175
Cards
Entrez_Gene (NCBI)OR4D6    olfactory receptor family 4 subfamily D member 6
AliasesOR11-250
GeneCards (Weizmann)OR4D6
Ensembl hg19 (Hinxton)ENSG00000166884 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166884 [Gene_View]  ENSG00000166884 [Sequence]  chr11:59456961-59457905 [Contig_View]  OR4D6 [Vega]
ICGC DataPortalENSG00000166884
TCGA cBioPortalOR4D6
AceView (NCBI)OR4D6
Genatlas (Paris)OR4D6
SOURCE (Princeton)OR4D6
Genetics Home Reference (NIH)OR4D6
Genomic and cartography
GoldenPath hg38 (UCSC)OR4D6  -     chr11:59456961-59457905 +  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR4D6  -     11q12.1   [Description]    (hg19-Feb_2009)
GoldenPathOR4D6 - 11q12.1 [CytoView hg19]  OR4D6 - 11q12.1 [CytoView hg38]
ImmunoBaseENSG00000166884
genome Data Viewer NCBIOR4D6 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC137028 BC137029
RefSeq transcript (Entrez)NM_001004708
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR4D6
Alternative Splicing GalleryENSG00000166884
Gene ExpressionOR4D6 [ NCBI-GEO ]   OR4D6 [ EBI - ARRAY_EXPRESS ]   OR4D6 [ SEEK ]   OR4D6 [ MEM ]
Gene Expression Viewer (FireBrowse)OR4D6 [ Firebrowse - Broad ]
GenevisibleExpression of OR4D6 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219983
GTEX Portal (Tissue expression)OR4D6
Human Protein AtlasENSG00000166884-OR4D6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGJ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGJ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGJ1
Splice isoforms : SwissVarQ8NGJ1
PhosPhoSitePlusQ8NGJ1
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)7tm_4 (PF13853)   
Domain families : Pfam (NCBI)pfam13853   
Conserved Domain (NCBI)OR4D6
Blocks (Seattle)OR4D6
SuperfamilyQ8NGJ1
Human Protein Atlas [tissue]ENSG00000166884-OR4D6 [tissue]
Peptide AtlasQ8NGJ1
HPRD17727
IPIIPI00303463   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGJ1
IntAct (EBI)Q8NGJ1
BioGRIDOR4D6
STRING (EMBL)OR4D6
ZODIACOR4D6
Ontologies - Pathways
QuickGOQ8NGJ1
Ontology : AmiGOG protein-coupled receptor activity  olfactory receptor activity  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG protein-coupled receptor activity  olfactory receptor activity  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR4D6
Atlas of Cancer Signalling NetworkOR4D6
Wikipedia pathwaysOR4D6
Orthology - Evolution
OrthoDB219983
GeneTree (enSembl)ENSG00000166884
Phylogenetic Trees/Animal Genes : TreeFamOR4D6
HOGENOMQ8NGJ1
Homologs : HomoloGeneOR4D6
Homology/Alignments : Family Browser (UCSC)OR4D6
Gene fusions - Rearrangements
Fusion : QuiverOR4D6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR4D6 [hg38]
dbVarOR4D6
ClinVarOR4D6
MonarchOR4D6
1000_GenomesOR4D6 
Exome Variant ServerOR4D6
GNOMAD BrowserENSG00000166884
Varsome BrowserOR4D6
Genomic Variants (DGV)OR4D6 [DGVbeta]
DECIPHEROR4D6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR4D6 
Mutations
ICGC Data PortalOR4D6 
TCGA Data PortalOR4D6 
Broad Tumor PortalOR4D6
OASIS PortalOR4D6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR4D6  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DOR4D6
Mutations and Diseases : HGMDOR4D6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR4D6
DgiDB (Drug Gene Interaction Database)OR4D6
DoCM (Curated mutations)OR4D6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR4D6 (select a term)
intoGenOR4D6
Cancer3DOR4D6(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR4D6
MedgenOR4D6
Genetic Testing Registry OR4D6
NextProtQ8NGJ1 [Medical]
GENETestsOR4D6
Target ValidationOR4D6
Huge Navigator OR4D6 [HugePedia]
ClinGenOR4D6
Clinical trials, drugs, therapy
MyCancerGenomeOR4D6
Protein Interactions : CTD
Pharm GKB GenePA32273
Clinical trialOR4D6
Miscellaneous
canSAR (ICR)OR4D6 (select the gene name)
HarmonizomeOR4D6
DataMed IndexOR4D6
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR4D6
EVEXOR4D6
GoPubMedOR4D6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:20:39 CET 2020

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