Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OR4D6 (olfactory receptor family 4 subfamily D member 6)

Identity

Alias_namesolfactory receptor, family 4, subfamily D, member 6
Other aliasOR11-250
HGNC (Hugo) OR4D6
LocusID (NCBI) 219983
Atlas_Id 71321
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 59456961 and ends at 59457905 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR4D6   15175
Cards
Entrez_Gene (NCBI)OR4D6  219983  olfactory receptor family 4 subfamily D member 6
AliasesOR11-250
GeneCards (Weizmann)OR4D6
Ensembl hg19 (Hinxton)ENSG00000166884 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166884 [Gene_View]  chr11:59456961-59457905 [Contig_View]  OR4D6 [Vega]
ICGC DataPortalENSG00000166884
TCGA cBioPortalOR4D6
AceView (NCBI)OR4D6
Genatlas (Paris)OR4D6
WikiGenes219983
SOURCE (Princeton)OR4D6
Genetics Home Reference (NIH)OR4D6
Genomic and cartography
GoldenPath hg38 (UCSC)OR4D6  -     chr11:59456961-59457905 +  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR4D6  -     11q12.1   [Description]    (hg19-Feb_2009)
EnsemblOR4D6 - 11q12.1 [CytoView hg19]  OR4D6 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIOR4D6 [Mapview hg19]  OR4D6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC137028 BC137029
RefSeq transcript (Entrez)NM_001004708
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR4D6
Cluster EST : UnigeneHs.553650 [ NCBI ]
CGAP (NCI)Hs.553650
Alternative Splicing GalleryENSG00000166884
Gene ExpressionOR4D6 [ NCBI-GEO ]   OR4D6 [ EBI - ARRAY_EXPRESS ]   OR4D6 [ SEEK ]   OR4D6 [ MEM ]
Gene Expression Viewer (FireBrowse)OR4D6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219983
GTEX Portal (Tissue expression)OR4D6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGJ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGJ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGJ1
Splice isoforms : SwissVarQ8NGJ1
PhosPhoSitePlusQ8NGJ1
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR4D6
DMDM Disease mutations219983
Blocks (Seattle)OR4D6
SuperfamilyQ8NGJ1
Human Protein AtlasENSG00000166884
Peptide AtlasQ8NGJ1
HPRD17727
IPIIPI00303463   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGJ1
IntAct (EBI)Q8NGJ1
FunCoupENSG00000166884
BioGRIDOR4D6
STRING (EMBL)OR4D6
ZODIACOR4D6
Ontologies - Pathways
QuickGOQ8NGJ1
Ontology : AmiGOtransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBItransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR4D6
Atlas of Cancer Signalling NetworkOR4D6
Wikipedia pathwaysOR4D6
Orthology - Evolution
OrthoDB219983
GeneTree (enSembl)ENSG00000166884
Phylogenetic Trees/Animal Genes : TreeFamOR4D6
HOVERGENQ8NGJ1
HOGENOMQ8NGJ1
Homologs : HomoloGeneOR4D6
Homology/Alignments : Family Browser (UCSC)OR4D6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR4D6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR4D6
dbVarOR4D6
ClinVarOR4D6
1000_GenomesOR4D6 
Exome Variant ServerOR4D6
ExAC (Exome Aggregation Consortium)OR4D6 (select the gene name)
Genetic variants : HAPMAP219983
Genomic Variants (DGV)OR4D6 [DGVbeta]
DECIPHEROR4D6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR4D6 
Mutations
ICGC Data PortalOR4D6 
TCGA Data PortalOR4D6 
Broad Tumor PortalOR4D6
OASIS PortalOR4D6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR4D6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR4D6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR4D6
DgiDB (Drug Gene Interaction Database)OR4D6
DoCM (Curated mutations)OR4D6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR4D6 (select a term)
intoGenOR4D6
Cancer3DOR4D6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR4D6
Genetic Testing Registry OR4D6
NextProtQ8NGJ1 [Medical]
TSGene219983
GENETestsOR4D6
Target ValidationOR4D6
Huge Navigator OR4D6 [HugePedia]
snp3D : Map Gene to Disease219983
BioCentury BCIQOR4D6
ClinGenOR4D6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219983
Chemical/Pharm GKB GenePA32273
Clinical trialOR4D6
Miscellaneous
canSAR (ICR)OR4D6 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR4D6
EVEXOR4D6
GoPubMedOR4D6
iHOPOR4D6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:34:19 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.