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OR4D9 (olfactory receptor family 4 subfamily D member 9)

Identity

Alias_namesolfactory receptor, family 4, subfamily D, member 9 pseudogene
olfactory receptor, family 4, subfamily D, member 9
Other aliasOR11-253
HGNC (Hugo) OR4D9
LocusID (NCBI) 390199
Atlas_Id 71322
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 59514913 and ends at 59515857 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR4D9   15178
Cards
Entrez_Gene (NCBI)OR4D9  390199  olfactory receptor family 4 subfamily D member 9
AliasesOR11-253
GeneCards (Weizmann)OR4D9
Ensembl hg19 (Hinxton)ENSG00000172742 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172742 [Gene_View]  chr11:59514913-59515857 [Contig_View]  OR4D9 [Vega]
ICGC DataPortalENSG00000172742
TCGA cBioPortalOR4D9
AceView (NCBI)OR4D9
Genatlas (Paris)OR4D9
WikiGenes390199
SOURCE (Princeton)OR4D9
Genetics Home Reference (NIH)OR4D9
Genomic and cartography
GoldenPath hg38 (UCSC)OR4D9  -     chr11:59514913-59515857 +  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR4D9  -     11q12.1   [Description]    (hg19-Feb_2009)
EnsemblOR4D9 - 11q12.1 [CytoView hg19]  OR4D9 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIOR4D9 [Mapview hg19]  OR4D9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001004711
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR4D9
Cluster EST : UnigeneHs.553757 [ NCBI ]
CGAP (NCI)Hs.553757
Alternative Splicing GalleryENSG00000172742
Gene ExpressionOR4D9 [ NCBI-GEO ]   OR4D9 [ EBI - ARRAY_EXPRESS ]   OR4D9 [ SEEK ]   OR4D9 [ MEM ]
Gene Expression Viewer (FireBrowse)OR4D9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390199
GTEX Portal (Tissue expression)OR4D9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGE8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGE8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGE8
Splice isoforms : SwissVarQ8NGE8
PhosPhoSitePlusQ8NGE8
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR4D9
DMDM Disease mutations390199
Blocks (Seattle)OR4D9
SuperfamilyQ8NGE8
Human Protein AtlasENSG00000172742
Peptide AtlasQ8NGE8
HPRD17728
IPIIPI00168995   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGE8
IntAct (EBI)Q8NGE8
FunCoupENSG00000172742
BioGRIDOR4D9
STRING (EMBL)OR4D9
ZODIACOR4D9
Ontologies - Pathways
QuickGOQ8NGE8
Ontology : AmiGOtransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBItransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR4D9
Atlas of Cancer Signalling NetworkOR4D9
Wikipedia pathwaysOR4D9
Orthology - Evolution
OrthoDB390199
GeneTree (enSembl)ENSG00000172742
Phylogenetic Trees/Animal Genes : TreeFamOR4D9
HOVERGENQ8NGE8
HOGENOMQ8NGE8
Homologs : HomoloGeneOR4D9
Homology/Alignments : Family Browser (UCSC)OR4D9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR4D9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR4D9
dbVarOR4D9
ClinVarOR4D9
1000_GenomesOR4D9 
Exome Variant ServerOR4D9
ExAC (Exome Aggregation Consortium)OR4D9 (select the gene name)
Genetic variants : HAPMAP390199
Genomic Variants (DGV)OR4D9 [DGVbeta]
DECIPHEROR4D9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR4D9 
Mutations
ICGC Data PortalOR4D9 
TCGA Data PortalOR4D9 
Broad Tumor PortalOR4D9
OASIS PortalOR4D9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR4D9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR4D9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR4D9
DgiDB (Drug Gene Interaction Database)OR4D9
DoCM (Curated mutations)OR4D9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR4D9 (select a term)
intoGenOR4D9
Cancer3DOR4D9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR4D9
Genetic Testing Registry OR4D9
NextProtQ8NGE8 [Medical]
TSGene390199
GENETestsOR4D9
Target ValidationOR4D9
Huge Navigator OR4D9 [HugePedia]
snp3D : Map Gene to Disease390199
BioCentury BCIQOR4D9
ClinGenOR4D9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390199
Chemical/Pharm GKB GenePA32276
Clinical trialOR4D9
Miscellaneous
canSAR (ICR)OR4D9 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR4D9
EVEXOR4D9
GoPubMedOR4D9
iHOPOR4D9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:34:19 CEST 2017

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