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OR4F16 (olfactory receptor family 4 subfamily F member 16)

Identity

Alias_namesolfactory receptor, family 4, subfamily F, member 16
Other aliasOR1-1
OR7-21
HGNC (Hugo) OR4F16
LocusID (NCBI) 81399
Atlas_Id 71326
Location 1p36.33  [Link to chromosome band 1p36]
Location_base_pair Starts at 450740 and ends at 451678 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR4F16   15079
Cards
Entrez_Gene (NCBI)OR4F16  81399  olfactory receptor family 4 subfamily F member 16
AliasesOR1-1; OR7-21
GeneCards (Weizmann)OR4F16
Ensembl hg19 (Hinxton)ENSG00000273547 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000273547 [Gene_View]  chr1:450740-451678 [Contig_View]  OR4F16 [Vega]
ICGC DataPortalENSG00000273547
TCGA cBioPortalOR4F16
AceView (NCBI)OR4F16
Genatlas (Paris)OR4F16
WikiGenes81399
SOURCE (Princeton)OR4F16
Genetics Home Reference (NIH)OR4F16
Genomic and cartography
GoldenPath hg38 (UCSC)OR4F16  -     chr1:450740-451678 -  1p36.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR4F16  -     1p36.33   [Description]    (hg19-Feb_2009)
EnsemblOR4F16 - 1p36.33 [CytoView hg19]  OR4F16 - 1p36.33 [CytoView hg38]
Mapping of homologs : NCBIOR4F16 [Mapview hg19]  OR4F16 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC137547 BC137568
RefSeq transcript (Entrez)NM_001005277
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR4F16
Cluster EST : UnigeneHs.632360 [ NCBI ]
CGAP (NCI)Hs.632360
Alternative Splicing GalleryENSG00000273547
Gene ExpressionOR4F16 [ NCBI-GEO ]   OR4F16 [ EBI - ARRAY_EXPRESS ]   OR4F16 [ SEEK ]   OR4F16 [ MEM ]
Gene Expression Viewer (FireBrowse)OR4F16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81399
GTEX Portal (Tissue expression)OR4F16
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6IEY1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6IEY1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6IEY1
Splice isoforms : SwissVarQ6IEY1
PhosPhoSitePlusQ6IEY1
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR4F16
DMDM Disease mutations81399
Blocks (Seattle)OR4F16
SuperfamilyQ6IEY1
Human Protein AtlasENSG00000273547
Peptide AtlasQ6IEY1
HPRD14969
Protein Interaction databases
DIP (DOE-UCLA)Q6IEY1
IntAct (EBI)Q6IEY1
FunCoupENSG00000273547
BioGRIDOR4F16
STRING (EMBL)OR4F16
ZODIACOR4F16
Ontologies - Pathways
QuickGOQ6IEY1
Ontology : AmiGOtransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBItransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR4F16
Atlas of Cancer Signalling NetworkOR4F16
Wikipedia pathwaysOR4F16
Orthology - Evolution
OrthoDB81399
GeneTree (enSembl)ENSG00000273547
Phylogenetic Trees/Animal Genes : TreeFamOR4F16
HOVERGENQ6IEY1
HOGENOMQ6IEY1
Homologs : HomoloGeneOR4F16
Homology/Alignments : Family Browser (UCSC)OR4F16
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR4F16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR4F16
dbVarOR4F16
ClinVarOR4F16
1000_GenomesOR4F16 
Exome Variant ServerOR4F16
ExAC (Exome Aggregation Consortium)OR4F16 (select the gene name)
Genetic variants : HAPMAP81399
Genomic Variants (DGV)OR4F16 [DGVbeta]
DECIPHEROR4F16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR4F16 
Mutations
ICGC Data PortalOR4F16 
TCGA Data PortalOR4F16 
Broad Tumor PortalOR4F16
OASIS PortalOR4F16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR4F16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR4F16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR4F16
DgiDB (Drug Gene Interaction Database)OR4F16
DoCM (Curated mutations)OR4F16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR4F16 (select a term)
intoGenOR4F16
Cancer3DOR4F16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR4F16
Genetic Testing Registry OR4F16
NextProtQ6IEY1 [Medical]
TSGene81399
GENETestsOR4F16
Target ValidationOR4F16
Huge Navigator OR4F16 [HugePedia]
snp3D : Map Gene to Disease81399
BioCentury BCIQOR4F16
ClinGenOR4F16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81399
Chemical/Pharm GKB GenePA32284
Clinical trialOR4F16
Miscellaneous
canSAR (ICR)OR4F16 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR4F16
EVEXOR4F16
GoPubMedOR4F16
iHOPOR4F16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:34:20 CEST 2017

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