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OR4F17 (olfactory receptor family 4 subfamily F member 17)

Identity

Alias_namesOR4F19
OR4F11P
OR4F18
olfactory receptor, family 4, subfamily F, member 17
Other alias
HGNC (Hugo) OR4F17
LocusID (NCBI) 81099
Atlas_Id 71327
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 110679 and ends at 111596 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR4F17   15381
Cards
Entrez_Gene (NCBI)OR4F17  81099  olfactory receptor family 4 subfamily F member 17
AliasesOR4F11P; OR4F18; OR4F19
GeneCards (Weizmann)OR4F17
Ensembl hg19 (Hinxton)ENSG00000176695 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176695 [Gene_View]  chr19:110679-111596 [Contig_View]  OR4F17 [Vega]
ICGC DataPortalENSG00000176695
TCGA cBioPortalOR4F17
AceView (NCBI)OR4F17
Genatlas (Paris)OR4F17
WikiGenes81099
SOURCE (Princeton)OR4F17
Genetics Home Reference (NIH)OR4F17
Genomic and cartography
GoldenPath hg38 (UCSC)OR4F17  -     chr19:110679-111596 +  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR4F17  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblOR4F17 - 19p13.3 [CytoView hg19]  OR4F17 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIOR4F17 [Mapview hg19]  OR4F17 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY972817 AY972818 BC136848 BC136867
RefSeq transcript (Entrez)NM_001005240
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR4F17
Cluster EST : UnigeneHs.572591 [ NCBI ]
CGAP (NCI)Hs.572591
Alternative Splicing GalleryENSG00000176695
Gene ExpressionOR4F17 [ NCBI-GEO ]   OR4F17 [ EBI - ARRAY_EXPRESS ]   OR4F17 [ SEEK ]   OR4F17 [ MEM ]
Gene Expression Viewer (FireBrowse)OR4F17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81099
GTEX Portal (Tissue expression)OR4F17
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGA8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGA8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGA8
Splice isoforms : SwissVarQ8NGA8
PhosPhoSitePlusQ8NGA8
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR4F17
DMDM Disease mutations81099
Blocks (Seattle)OR4F17
SuperfamilyQ8NGA8
Human Protein AtlasENSG00000176695
Peptide AtlasQ8NGA8
HPRD14970
IPIIPI00303328   IPI00883905   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGA8
IntAct (EBI)Q8NGA8
FunCoupENSG00000176695
BioGRIDOR4F17
STRING (EMBL)OR4F17
ZODIACOR4F17
Ontologies - Pathways
QuickGOQ8NGA8
Ontology : AmiGOtransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBItransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR4F17
Atlas of Cancer Signalling NetworkOR4F17
Wikipedia pathwaysOR4F17
Orthology - Evolution
OrthoDB81099
GeneTree (enSembl)ENSG00000176695
Phylogenetic Trees/Animal Genes : TreeFamOR4F17
HOVERGENQ8NGA8
HOGENOMQ8NGA8
Homologs : HomoloGeneOR4F17
Homology/Alignments : Family Browser (UCSC)OR4F17
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR4F17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR4F17
dbVarOR4F17
ClinVarOR4F17
1000_GenomesOR4F17 
Exome Variant ServerOR4F17
ExAC (Exome Aggregation Consortium)OR4F17 (select the gene name)
Genetic variants : HAPMAP81099
Genomic Variants (DGV)OR4F17 [DGVbeta]
DECIPHEROR4F17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR4F17 
Mutations
ICGC Data PortalOR4F17 
TCGA Data PortalOR4F17 
Broad Tumor PortalOR4F17
OASIS PortalOR4F17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR4F17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR4F17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR4F17
DgiDB (Drug Gene Interaction Database)OR4F17
DoCM (Curated mutations)OR4F17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR4F17 (select a term)
intoGenOR4F17
Cancer3DOR4F17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR4F17
Genetic Testing Registry OR4F17
NextProtQ8NGA8 [Medical]
TSGene81099
GENETestsOR4F17
Target ValidationOR4F17
Huge Navigator OR4F17 [HugePedia]
snp3D : Map Gene to Disease81099
BioCentury BCIQOR4F17
ClinGenOR4F17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81099
Chemical/Pharm GKB GenePA32285
Clinical trialOR4F17
Miscellaneous
canSAR (ICR)OR4F17 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR4F17
EVEXOR4F17
GoPubMedOR4F17
iHOPOR4F17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:34:21 CEST 2017

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