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OR4F21 (olfactory receptor family 4 subfamily F member 21)

Identity

Alias_namesOR4F21P
olfactory receptor, family 4, subfamily F, member 21
Other alias
HGNC (Hugo) OR4F21
LocusID (NCBI) 441308
Atlas_Id 71328
Location 8p23.3  [Link to chromosome band 8p23]
Location_base_pair Starts at 166086 and ends at 167024 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR4F21   19583
Cards
Entrez_Gene (NCBI)OR4F21  441308  olfactory receptor family 4 subfamily F member 21
AliasesOR4F21P
GeneCards (Weizmann)OR4F21
Ensembl hg19 (Hinxton)ENSG00000176269 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176269 [Gene_View]  chr8:166086-167024 [Contig_View]  OR4F21 [Vega]
ICGC DataPortalENSG00000176269
TCGA cBioPortalOR4F21
AceView (NCBI)OR4F21
Genatlas (Paris)OR4F21
WikiGenes441308
SOURCE (Princeton)OR4F21
Genetics Home Reference (NIH)OR4F21
Genomic and cartography
GoldenPath hg38 (UCSC)OR4F21  -     chr8:166086-167024 -  8p23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR4F21  -     8p23.3   [Description]    (hg19-Feb_2009)
EnsemblOR4F21 - 8p23.3 [CytoView hg19]  OR4F21 - 8p23.3 [CytoView hg38]
Mapping of homologs : NCBIOR4F21 [Mapview hg19]  OR4F21 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001005504
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR4F21
Cluster EST : UnigeneHs.690459 [ NCBI ]
CGAP (NCI)Hs.690459
Alternative Splicing GalleryENSG00000176269
Gene ExpressionOR4F21 [ NCBI-GEO ]   OR4F21 [ EBI - ARRAY_EXPRESS ]   OR4F21 [ SEEK ]   OR4F21 [ MEM ]
Gene Expression Viewer (FireBrowse)OR4F21 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441308
GTEX Portal (Tissue expression)OR4F21
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95013   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95013  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95013
Splice isoforms : SwissVarO95013
PhosPhoSitePlusO95013
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR4F21
DMDM Disease mutations441308
Blocks (Seattle)OR4F21
SuperfamilyO95013
Human Protein AtlasENSG00000176269
Peptide AtlasO95013
HPRD17729
IPIIPI00419364   
Protein Interaction databases
DIP (DOE-UCLA)O95013
IntAct (EBI)O95013
FunCoupENSG00000176269
BioGRIDOR4F21
STRING (EMBL)OR4F21
ZODIACOR4F21
Ontologies - Pathways
QuickGOO95013
Ontology : AmiGOtransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBItransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR4F21
Atlas of Cancer Signalling NetworkOR4F21
Wikipedia pathwaysOR4F21
Orthology - Evolution
OrthoDB441308
GeneTree (enSembl)ENSG00000176269
Phylogenetic Trees/Animal Genes : TreeFamOR4F21
HOVERGENO95013
HOGENOMO95013
Homologs : HomoloGeneOR4F21
Homology/Alignments : Family Browser (UCSC)OR4F21
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR4F21 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR4F21
dbVarOR4F21
ClinVarOR4F21
1000_GenomesOR4F21 
Exome Variant ServerOR4F21
ExAC (Exome Aggregation Consortium)OR4F21 (select the gene name)
Genetic variants : HAPMAP441308
Genomic Variants (DGV)OR4F21 [DGVbeta]
DECIPHEROR4F21 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR4F21 
Mutations
ICGC Data PortalOR4F21 
TCGA Data PortalOR4F21 
Broad Tumor PortalOR4F21
OASIS PortalOR4F21 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR4F21  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR4F21
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR4F21
DgiDB (Drug Gene Interaction Database)OR4F21
DoCM (Curated mutations)OR4F21 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR4F21 (select a term)
intoGenOR4F21
Cancer3DOR4F21(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR4F21
Genetic Testing Registry OR4F21
NextProtO95013 [Medical]
TSGene441308
GENETestsOR4F21
Target ValidationOR4F21
Huge Navigator OR4F21 [HugePedia]
snp3D : Map Gene to Disease441308
BioCentury BCIQOR4F21
ClinGenOR4F21
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441308
Chemical/Pharm GKB GenePA134918173
Clinical trialOR4F21
Miscellaneous
canSAR (ICR)OR4F21 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR4F21
EVEXOR4F21
GoPubMedOR4F21
iHOPOR4F21
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:34:21 CEST 2017

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