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OR4F29 (olfactory receptor family 4 subfamily F member 29)

Identity

Alias_namesolfactory receptor, family 4, subfamily F, member 29
Other aliasOR7-21
HGNC (Hugo) OR4F29
LocusID (NCBI) 729759
Atlas_Id 71329
Location 1p36.33  [Link to chromosome band 1p36]
Location_base_pair Starts at 450740 and ends at 451678 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR4F29   31275
Cards
Entrez_Gene (NCBI)OR4F29  729759  olfactory receptor family 4 subfamily F member 29
AliasesOR7-21
GeneCards (Weizmann)OR4F29
Ensembl hg19 (Hinxton)ENSG00000278566 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000278566 [Gene_View]  chr1:450740-451678 [Contig_View]  OR4F29 [Vega]
ICGC DataPortalENSG00000278566
TCGA cBioPortalOR4F29
AceView (NCBI)OR4F29
Genatlas (Paris)OR4F29
WikiGenes729759
SOURCE (Princeton)OR4F29
Genetics Home Reference (NIH)OR4F29
Genomic and cartography
GoldenPath hg38 (UCSC)OR4F29  -     chr1:450740-451678 -  1p36.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR4F29  -     1p36.33   [Description]    (hg19-Feb_2009)
EnsemblOR4F29 - 1p36.33 [CytoView hg19]  OR4F29 - 1p36.33 [CytoView hg38]
Mapping of homologs : NCBIOR4F29 [Mapview hg19]  OR4F29 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC137547 BC137568
RefSeq transcript (Entrez)NM_001005221
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR4F29
Cluster EST : UnigeneHs.722724 [ NCBI ]
CGAP (NCI)Hs.722724
Alternative Splicing GalleryENSG00000278566
Gene ExpressionOR4F29 [ NCBI-GEO ]   OR4F29 [ EBI - ARRAY_EXPRESS ]   OR4F29 [ SEEK ]   OR4F29 [ MEM ]
Gene Expression Viewer (FireBrowse)OR4F29 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729759
GTEX Portal (Tissue expression)OR4F29
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6IEY1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6IEY1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6IEY1
Splice isoforms : SwissVarQ6IEY1
PhosPhoSitePlusQ6IEY1
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR4F29
DMDM Disease mutations729759
Blocks (Seattle)OR4F29
SuperfamilyQ6IEY1
Human Protein AtlasENSG00000278566
Peptide AtlasQ6IEY1
HPRD14971
IPIIPI00465263   IPI00879036   IPI00386352   
Protein Interaction databases
DIP (DOE-UCLA)Q6IEY1
IntAct (EBI)Q6IEY1
FunCoupENSG00000278566
BioGRIDOR4F29
STRING (EMBL)OR4F29
ZODIACOR4F29
Ontologies - Pathways
QuickGOQ6IEY1
Ontology : AmiGOtransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBItransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR4F29
Atlas of Cancer Signalling NetworkOR4F29
Wikipedia pathwaysOR4F29
Orthology - Evolution
OrthoDB729759
GeneTree (enSembl)ENSG00000278566
Phylogenetic Trees/Animal Genes : TreeFamOR4F29
HOVERGENQ6IEY1
HOGENOMQ6IEY1
Homologs : HomoloGeneOR4F29
Homology/Alignments : Family Browser (UCSC)OR4F29
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR4F29 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR4F29
dbVarOR4F29
ClinVarOR4F29
1000_GenomesOR4F29 
Exome Variant ServerOR4F29
ExAC (Exome Aggregation Consortium)OR4F29 (select the gene name)
Genetic variants : HAPMAP729759
Genomic Variants (DGV)OR4F29 [DGVbeta]
DECIPHEROR4F29 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR4F29 
Mutations
ICGC Data PortalOR4F29 
TCGA Data PortalOR4F29 
Broad Tumor PortalOR4F29
OASIS PortalOR4F29 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR4F29  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR4F29
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR4F29
DgiDB (Drug Gene Interaction Database)OR4F29
DoCM (Curated mutations)OR4F29 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR4F29 (select a term)
intoGenOR4F29
Cancer3DOR4F29(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR4F29
Genetic Testing Registry OR4F29
NextProtQ6IEY1 [Medical]
TSGene729759
GENETestsOR4F29
Target ValidationOR4F29
Huge Navigator OR4F29 [HugePedia]
snp3D : Map Gene to Disease729759
BioCentury BCIQOR4F29
ClinGenOR4F29
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729759
Chemical/Pharm GKB GenePA134963748
Clinical trialOR4F29
Miscellaneous
canSAR (ICR)OR4F29 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR4F29
EVEXOR4F29
GoPubMedOR4F29
iHOPOR4F29
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:34:41 CEST 2017

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