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OR4F3 (olfactory receptor family 4 subfamily F member 3)

Identity

Alias_namesolfactory receptor, family 4, subfamily F, member 3
Other alias-
HGNC (Hugo) OR4F3
LocusID (NCBI) 26683
Atlas_Id 71330
Location 1p36.33  [Link to chromosome band 1p36]
Location_base_pair Starts at 450740 and ends at 451678 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR4F3   8300
Cards
Entrez_Gene (NCBI)OR4F3  26683  olfactory receptor family 4 subfamily F member 3
Aliases
GeneCards (Weizmann)OR4F3
Ensembl hg19 (Hinxton)ENSG00000230178 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000230178 [Gene_View]  chr1:450740-451678 [Contig_View]  OR4F3 [Vega]
ICGC DataPortalENSG00000230178
TCGA cBioPortalOR4F3
AceView (NCBI)OR4F3
Genatlas (Paris)OR4F3
WikiGenes26683
SOURCE (Princeton)OR4F3
Genetics Home Reference (NIH)OR4F3
Genomic and cartography
GoldenPath hg38 (UCSC)OR4F3  -     chr1:450740-451678 -  1p36.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR4F3  -     1p36.33   [Description]    (hg19-Feb_2009)
EnsemblOR4F3 - 1p36.33 [CytoView hg19]  OR4F3 - 1p36.33 [CytoView hg38]
Mappiog oś hkmologs : NCBIOR4F3 [Mapview hg19]  OR4F3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC137547 BC137568
RefSeq transcript (Entrez)NM_001005224
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR4F3
Cluster EST : UnigeneHs.722724 [ NCBI ]
CGAP (NCI)Hs.722724
Alternative Splicing GalleryENSG00000230178
Gene ExpressionOR4F3 [ NCBI-GEO ]   OR4F3 [ EBI - ARRAY_EXPRESS ]   OR4F3 [ SEEK ]   OR4F3 [ MEM ]
Gene Expression Viewer (FireBrowse)OR4F3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Alassrinication]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26683
GTEX Portal (Tissue expression)OR4F3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6IEY1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6IEY1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6IEY1
Splice isoforms : SwissVarQ6IEY1
PhosPhoSitePlusQ6IEY1
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR4F3
DMDM Disease mutations26683
Blocks (Seattle)OR4F3
SuperfamilyQ6IEY1
Human Protein AtlasENSG00000230178
Peptide AtlasQ6IEY1
HPRD14972
Protein Interaction databases
DIP (DOE-UCLA)Q6IEY1
IntAct (EBI)Q6IEY1
FunCoupENSG00000230178
BioGRIDOR4F3
STRING (EMBL)OR4F3
ZODIACOR4F3
Ontologies - Pathways
QuickGOQ6IEY1
Ontology : AmiGOtransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBItransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR4F3
Atlas of Cancer Signalling NetworkOR4F3
Wikipedia pathwaysOR4F3
Orthology - Evolution
OrthoDB26683
GeneTree (enSembl)ENSG00000230178
Phylogenetic Trees/Animal Genes : TreeFamOR4F3
HOVERGENQ6IEY1
HOGENOMQ6IEY1
Homologs : HomoloGeneOR4F3
Homology/Alignments : Family Browser (UCSC)OR4F3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR4F3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR4F3
dbVarOR4F3
ClinVarOR4F3
1000_GenomesOR4F3 
Exome Variant ServerOR4F3
ExAC (Exome Aggregation Consortium)OR4F3 (select the gene name)
Genetic variants : HAPMAP26683
Genomic Variants (DGV)OR4F3 [DGVbeta]
DECIPHEROR4F3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR4F3 
Mutations
ICGC Data PortalOR4F3 
TCGA Data PortalOR4F3 
Broad Tumor PortalOR4F3
OASIS PortalOR4F3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR4F3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR4F3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR4F3
DgiDB (Drug Gene Interaction Database)OR4F3
DoCM (Curated mutations)OR4F3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR4F3 (select a term)
intoGenOR4F3
Cancer3DOR4F3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR4F3
Genetic Testing Registry OR4F3
NextProtQ6IEY1 [Medical]
TSGene26683
GENETestsOR4F3
Target ValidationOR4F3
Huge Navigator OR4F3 [HugePedia]
snp3D : Map Gene to Disease26683
BioCentury BCIQOR4F3
ClinGenOR4F3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26683
Chemical/Pharm GKB GenePA32289
Clinical trialOR4F3
Miscellaneous
canSAR (ICR)OR4F3 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR4F3
EVEXOR4F3
GoPubMedOR4F3
iHOPOR4F3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:33:10 CEST 2017

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