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OR4F5 (olfactory receptor, family 4, subfamily F, member 5)

Identity

Alias_namesolfactory receptor, family 4, subfamily F, member 5
Other alias-
HGNC (Hugo) OR4F5
LocusID (NCBI) 79501
Atlas_Id 71332
Location 1p36.33  [Link to chromosome band 1p36]
Location_base_pair Starts at 69091 and ends at 70008 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR4F5   14825
Cards
Entrez_Gene (NCBI)OR4F5  79501  olfactory receptor, family 4, subfamily F, member 5
Aliases
GeneCards (Weizmann)OR4F5
Ensembl hg19 (Hinxton)ENSG00000186092 [Gene_View]  chr1:69091-70008 [Contig_View]  OR4F5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000186092 [Gene_View]  chr1:69091-70008 [Contig_View]  OR4F5 [Vega]
ICGC DataPortalENSG00000186092
TCGA cBioPortalOR4F5
AceView (NCBI)OR4F5
Genatlas (Paris)OR4F5
WikiGenes79501
SOURCE (Princeton)OR4F5
Genetics Home Reference (NIH)OR4F5
Genomic and cartography
GoldenPath hg19 (UCSC)OR4F5  -     chr1:69091-70008 +  1p36.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR4F5  -     1p36.33   [Description]    (hg38-Dec_2013)
EnsemblOR4F5 - 1p36.33 [CytoView hg19]  OR4F5 - 1p36.33 [CytoView hg38]
Mapping of homologs : NCBIOR4F5 [Mapview hg19]  OR4F5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001005484
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_077402 NW_004929286
Consensus coding sequences : CCDS (NCBI)OR4F5
Cluster EST : UnigeneHs.554500 [ NCBI ]
CGAP (NCI)Hs.554500
Alternative Splicing GalleryENSG00000186092
Gene ExpressionOR4F5 [ NCBI-GEO ]   OR4F5 [ EBI - ARRAY_EXPRESS ]   OR4F5 [ SEEK ]   OR4F5 [ MEM ]
Gene Expression Viewer (FireBrowse)OR4F5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79501
GTEX Portal (Tissue expression)OR4F5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NH21   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NH21  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NH21
Splice isoforms : SwissVarQ8NH21
PhosPhoSitePlusQ8NH21
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR4F5
DMDM Disease mutations79501
Blocks (Seattle)OR4F5
SuperfamilyQ8NH21
Human Protein AtlasENSG00000186092
Peptide AtlasQ8NH21
HPRD14974
IPIIPI00169105   IPI01010102   
Protein Interaction databases
DIP (DOE-UCLA)Q8NH21
IntAct (EBI)Q8NH21
FunCoupENSG00000186092
BioGRIDOR4F5
STRING (EMBL)OR4F5
ZODIACOR4F5
Ontologies - Pathways
QuickGOQ8NH21
Ontology : AmiGOtransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBItransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR4F5
Atlas of Cancer Signalling NetworkOR4F5
Wikipedia pathwaysOR4F5
Orthology - Evolution
OrthoDB79501
GeneTree (enSembl)ENSG00000186092
Phylogenetic Trees/Animal Genes : TreeFamOR4F5
HOVERGENQ8NH21
HOGENOMQ8NH21
Homologs : HomoloGeneOR4F5
Homology/Alignments : Family Browser (UCSC)OR4F5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR4F5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR4F5
dbVarOR4F5
ClinVarOR4F5
1000_GenomesOR4F5 
Exome Variant ServerOR4F5
ExAC (Exome Aggregation Consortium)OR4F5 (select the gene name)
Genetic variants : HAPMAP79501
Genomic Variants (DGV)OR4F5 [DGVbeta]
DECIPHER (Syndromes)1:69091-70008  ENSG00000186092
CONAN: Copy Number AnalysisOR4F5 
Mutations
ICGC Data PortalOR4F5 
TCGA Data PortalOR4F5 
Broad Tumor PortalOR4F5
OASIS PortalOR4F5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR4F5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR4F5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR4F5
DgiDB (Drug Gene Interaction Database)OR4F5
DoCM (Curated mutations)OR4F5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR4F5 (select a term)
intoGenOR4F5
Cancer3DOR4F5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR4F5
Genetic Testing Registry OR4F5
NextProtQ8NH21 [Medical]
TSGene79501
GENETestsOR4F5
Huge Navigator OR4F5 [HugePedia]
snp3D : Map Gene to Disease79501
BioCentury BCIQOR4F5
ClinGenOR4F5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79501
Chemical/Pharm GKB GenePA32291
Clinical trialOR4F5
Miscellaneous
canSAR (ICR)OR4F5 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR4F5
EVEXOR4F5
GoPubMedOR4F5
iHOPOR4F5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:36:37 CET 2017

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