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OR4F6 (olfactory receptor family 4 subfamily F member 6)

Identity

Alias_namesOR4F12
olfactory receptor, family 4, subfamily F, member 12
olfactory receptor, family 4, subfamily F, member 6
Other aliasOR15-15
HGNC (Hugo) OR4F6
LocusID (NCBI) 390648
Atlas_Id 71333
Location 15q26.3  [Link to chromosome band 15q26]
Location_base_pair Starts at 101805720 and ends at 101806658 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR4F6   15372
Cards
Entrez_Gene (NCBI)OR4F6  390648  olfactory receptor family 4 subfamily F member 6
AliasesOR15-15; OR4F12
GeneCards (Weizmann)OR4F6
Ensembl hg19 (Hinxton)ENSG00000184140 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184140 [Gene_View]  chr15:101805720-101806658 [Contig_View]  OR4F6 [Vega]
ICGC DataPortalENSG00000184140
TCGA cBioPortalOR4F6
AceView (NCBI)OR4F6
Genatlas (Paris)OR4F6
WikiGenes390648
SOURCE (Princeton)OR4F6
Genetics Home Reference (NIH)OR4F6
Genomic and cartography
GoldenPath hg38 (UCSC)OR4F6  -     chr15:101805720-101806658 +  15q26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR4F6  -     15q26.3   [Description]    (hg19-Feb_2009)
EnsemblOR4F6 - 15q26.3 [CytoView hg19]  OR4F6 - 15q26.3 [CytoView hg38]
Mapping of homologs : NCBIOR4F6 [Mapview hg19]  OR4F6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC137002 BC137003
RefSeq transcript (Entrez)NM_001005326
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR4F6
Cluster EST : UnigeneHs.553399 [ NCBI ]
CGAP (NCI)Hs.553399
Alternative Splicing GalleryENSG00000184140
Gene ExpressionOR4F6 [ NCBI-GEO ]   OR4F6 [ EBI - ARRAY_EXPRESS ]   OR4F6 [ SEEK ]   OR4F6 [ MEM ]
Gene Expression Viewer (FireBrowse)OR4F6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390648
GTEX Portal (Tissue expression)OR4F6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGB9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGB9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGB9
Splice isoforms : SwissVarQ8NGB9
PhosPhoSitePlusQ8NGB9
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR4F6
DMDM Disease mutations390648
Blocks (Seattle)OR4F6
SuperfamilyQ8NGB9
Human Protein AtlasENSG00000184140
Peptide AtlasQ8NGB9
HPRD11415
IPIIPI00168972   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGB9
IntAct (EBI)Q8NGB9
FunCoupENSG00000184140
BioGRIDOR4F6
STRING (EMBL)OR4F6
ZODIACOR4F6
Ontologies - Pathways
QuickGOQ8NGB9
Ontology : AmiGOtransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBItransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR4F6
Atlas of Cancer Signalling NetworkOR4F6
Wikipedia pathwaysOR4F6
Orthology - Evolution
OrthoDB390648
GeneTree (enSembl)ENSG00000184140
Phylogenetic Trees/Animal Genes : TreeFamOR4F6
HOVERGENQ8NGB9
HOGENOMQ8NGB9
Homologs : HomoloGeneOR4F6
Homology/Alignments : Family Browser (UCSC)OR4F6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR4F6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR4F6
dbVarOR4F6
ClinVarOR4F6
1000_GenomesOR4F6 
Exome Variant ServerOR4F6
ExAC (Exome Aggregation Consortium)OR4F6 (select the gene name)
Genetic variants : HAPMAP390648
Genomic Variants (DGV)OR4F6 [DGVbeta]
DECIPHEROR4F6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR4F6 
Mutations
ICGC Data PortalOR4F6 
TCGA Data PortalOR4F6 
Broad Tumor PortalOR4F6
OASIS PortalOR4F6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR4F6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR4F6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR4F6
DgiDB (Drug Gene Interaction Database)OR4F6
DoCM (Curated mutations)OR4F6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR4F6 (select a term)
intoGenOR4F6
Cancer3DOR4F6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR4F6
Genetic Testing Registry OR4F6
NextProtQ8NGB9 [Medical]
TSGene390648
GENETestsOR4F6
Target ValidationOR4F6
Huge Navigator OR4F6 [HugePedia]
snp3D : Map Gene to Disease390648
BioCentury BCIQOR4F6
ClinGenOR4F6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390648
Chemical/Pharm GKB GenePA32292
Clinical trialOR4F6
Miscellaneous
canSAR (ICR)OR4F6 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR4F6
EVEXOR4F6
GoPubMedOR4F6
iHOPOR4F6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:33:10 CEST 2017

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