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OR4K1 (olfactory receptor, family 4, subfamily K, member 1)

Identity

Alias_namesolfactory receptor, family 4, subfamily K, member 1
Other aliasOR14-19
HGNC (Hugo) OR4K1
LocusID (NCBI) 79544
Atlas_Id 71334
Location 14q11.2  [Link to chromosome band 14q11]
Location_base_pair Starts at 20403767 and ends at 20404842 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR4K1   14726
Cards
Entrez_Gene (NCBI)OR4K1  79544  olfactory receptor, family 4, subfamily K, member 1
AliasesOR14-19
GeneCards (Weizmann)OR4K1
Ensembl hg19 (Hinxton)ENSG00000155249 [Gene_View]  chr14:20403767-20404842 [Contig_View]  OR4K1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000155249 [Gene_View]  chr14:20403767-20404842 [Contig_View]  OR4K1 [Vega]
ICGC DataPortalENSG00000155249
TCGA cBioPortalOR4K1
AceView (NCBI)OR4K1
Genatlas (Paris)OR4K1
WikiGenes79544
SOURCE (Princeton)OR4K1
Genetics Home Reference (NIH)OR4K1
Genomic and cartography
GoldenPath hg19 (UCSC)OR4K1  -     chr14:20403767-20404842 +  14q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR4K1  -     14q11.2   [Description]    (hg38-Dec_2013)
EnsemblOR4K1 - 14q11.2 [CytoView hg19]  OR4K1 - 14q11.2 [CytoView hg38]
Mapping of homologs : NCBIOR4K1 [Mapview hg19]  OR4K1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC151145
RefSeq transcript (Entrez)NM_001004063
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)OR4K1
Cluster EST : UnigeneHs.554584 [ NCBI ]
CGAP (NCI)Hs.554584
Alternative Splicing GalleryENSG00000155249
Gene ExpressionOR4K1 [ NCBI-GEO ]   OR4K1 [ EBI - ARRAY_EXPRESS ]   OR4K1 [ SEEK ]   OR4K1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR4K1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79544
GTEX Portal (Tissue expression)OR4K1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGD4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGD4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGD4
Splice isoforms : SwissVarQ8NGD4
PhosPhoSitePlusQ8NGD4
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR4K1
DMDM Disease mutations79544
Blocks (Seattle)OR4K1
SuperfamilyQ8NGD4
Human Protein AtlasENSG00000155249
Peptide AtlasQ8NGD4
HPRD14975
IPIIPI00168986   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGD4
IntAct (EBI)Q8NGD4
FunCoupENSG00000155249
BioGRIDOR4K1
STRING (EMBL)OR4K1
ZODIACOR4K1
Ontologies - Pathways
QuickGOQ8NGD4
Ontology : AmiGOtransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBItransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR4K1
Atlas of Cancer Signalling NetworkOR4K1
Wikipedia pathwaysOR4K1
Orthology - Evolution
OrthoDB79544
GeneTree (enSembl)ENSG00000155249
Phylogenetic Trees/Animal Genes : TreeFamOR4K1
HOVERGENQ8NGD4
HOGENOMQ8NGD4
Homologs : HomoloGeneOR4K1
Homology/Alignments : Family Browser (UCSC)OR4K1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR4K1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR4K1
dbVarOR4K1
ClinVarOR4K1
1000_GenomesOR4K1 
Exome Variant ServerOR4K1
ExAC (Exome Aggregation Consortium)OR4K1 (select the gene name)
Genetic variants : HAPMAP79544
Genomic Variants (DGV)OR4K1 [DGVbeta]
DECIPHER (Syndromes)14:20403767-20404842  ENSG00000155249
CONAN: Copy Number AnalysisOR4K1 
Mutations
ICGC Data PortalOR4K1 
TCGA Data PortalOR4K1 
Broad Tumor PortalOR4K1
OASIS PortalOR4K1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR4K1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR4K1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR4K1
DgiDB (Drug Gene Interaction Database)OR4K1
DoCM (Curated mutations)OR4K1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR4K1 (select a term)
intoGenOR4K1
Cancer3DOR4K1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR4K1
Genetic Testing Registry OR4K1
NextProtQ8NGD4 [Medical]
TSGene79544
GENETestsOR4K1
Huge Navigator OR4K1 [HugePedia]
snp3D : Map Gene to Disease79544
BioCentury BCIQOR4K1
ClinGenOR4K1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79544
Chemical/Pharm GKB GenePA32308
Clinical trialOR4K1
Miscellaneous
canSAR (ICR)OR4K1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR4K1
EVEXOR4K1
GoPubMedOR4K1
iHOPOR4K1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:36:38 CET 2017

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