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OR4K17 (olfactory receptor family 4 subfamily K member 17)

Identity

Alias_namesolfactory receptor, family 4, subfamily K, member 17
Other aliasOR14-29
HGNC (Hugo) OR4K17
LocusID (NCBI) 390436
Atlas_Id 71338
Location 14q11.2  [Link to chromosome band 14q11]
Location_base_pair Starts at 20117407 and ends at 20118438 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR4K17   15355
Cards
Entrez_Gene (NCBI)OR4K17  390436  olfactory receptor family 4 subfamily K member 17
AliasesOR14-29
GeneCards (Weizmann)OR4K17
Ensembl hg19 (Hinxton)ENSG00000176230 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176230 [Gene_View]  chr14:20117407-20118438 [Contig_View]  OR4K17 [Vega]
ICGC DataPortalENSG00000176230
TCGA cBioPortalOR4K17
AceView (NCBI)OR4K17
Genatlas (Paris)OR4K17
WikiGenes390436
SOURCE (Princeton)OR4K17
Genetics Home Reference (NIH)OR4K17
Genomic and cartography
GoldenPath hg38 (UCSC)OR4K17  -     chr14:20117407-20118438 +  14q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR4K17  -     14q11.2   [Description]    (hg19-Feb_2009)
EnsemblOR4K17 - 14q11.2 [CytoView hg19]  OR4K17 - 14q11.2 [CytoView hg38]
Mapping of homologs : NCBIOR4K17 [Mapview hg19]  OR4K17 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001004715
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR4K17
Cluster EST : UnigeneHs.553765 [ NCBI ]
CGAP (NCI)Hs.553765
Alternative Splicing GalleryENSG00000176230
Gene ExpressionOR4K17 [ NCBI-GEO ]   OR4K17 [ EBI - ARRAY_EXPRESS ]   OR4K17 [ SEEK ]   OR4K17 [ MEM ]
Gene Expression Viewer (FireBrowse)OR4K17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390436
GTEX Portal (Tissue expression)OR4K17
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGC6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGC6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGC6
Splice isoforms : SwissVarQ8NGC6
PhosPhoSitePlusQ8NGC6
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR4K17
DMDM Disease mutations390436
Blocks (Seattle)OR4K17
SuperfamilyQ8NGC6
Human Protein AtlasENSG00000176230
Peptide AtlasQ8NGC6
HPRD14979
IPIIPI00303352   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGC6
IntAct (EBI)Q8NGC6
FunCoupENSG00000176230
BioGRIDOR4K17
STRING (EMBL)OR4K17
ZODIACOR4K17
Ontologies - Pathways
QuickGOQ8NGC6
Ontology : AmiGOtransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBItransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR4K17
Atlas of Cancer Signalling NetworkOR4K17
Wikipedia pathwaysOR4K17
Orthology - Evolution
OrthoDB390436
GeneTree (enSembl)ENSG00000176230
Phylogenetic Trees/Animal Genes : TreeFamOR4K17
HOVERGENQ8NGC6
HOGENOMQ8NGC6
Homologs : HomoloGeneOR4K17
Homology/Alignments : Family Browser (UCSC)OR4K17
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR4K17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR4K17
dbVarOR4K17
ClinVarOR4K17
1000_GenomesOR4K17 
Exome Variant ServerOR4K17
ExAC (Exome Aggregation Consortium)OR4K17 (select the gene name)
Genetic variants : HAPMAP390436
Genomic Variants (DGV)OR4K17 [DGVbeta]
DECIPHEROR4K17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR4K17 
Mutations
ICGC Data PortalOR4K17 
TCGA Data PortalOR4K17 
Broad Tumor PortalOR4K17
OASIS PortalOR4K17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR4K17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR4K17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR4K17
DgiDB (Drug Gene Interaction Database)OR4K17
DoCM (Curated mutations)OR4K17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR4K17 (select a term)
intoGenOR4K17
Cancer3DOR4K17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR4K17
Genetic Testing Registry OR4K17
NextProtQ8NGC6 [Medical]
TSGene390436
GENETestsOR4K17
Target ValidationOR4K17
Huge Navigator OR4K17 [HugePedia]
snp3D : Map Gene to Disease390436
BioCentury BCIQOR4K17
ClinGenOR4K17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390436
Chemical/Pharm GKB GenePA32316
Clinical trialOR4K17
Miscellaneous
canSAR (ICR)OR4K17 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR4K17
EVEXOR4K17
GoPubMedOR4K17
iHOPOR4K17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:34:23 CEST 2017

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