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OR4K2 (olfactory receptor family 4 subfamily K member 2)

Identity

Alias_namesolfactory receptor, family 4, subfamily K, member 2
Other aliasOR14-15
HGNC (Hugo) OR4K2
LocusID (NCBI) 390431
Atlas_Id 71339
Location 14q11.2  [Link to chromosome band 14q11]
Location_base_pair Starts at 19876268 and ends at 19877212 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR4K2   14728
Cards
Entrez_Gene (NCBI)OR4K2  390431  olfactory receptor family 4 subfamily K member 2
AliasesOR14-15
GeneCards (Weizmann)OR4K2
Ensembl hg19 (Hinxton)ENSG00000165762 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165762 [Gene_View]  chr14:19876268-19877212 [Contig_View]  OR4K2 [Vega]
ICGC DataPortalENSG00000165762
TCGA cBioPortalOR4K2
AceView (NCBI)OR4K2
Genatlas (Paris)OR4K2
WikiGenes390431
SOURCE (Princeton)OR4K2
Genetics Home Reference (NIH)OR4K2
Genomic and cartography
GoldenPath hg38 (UCSC)OR4K2  -     chr14:19876268-19877212 +  14q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR4K2  -     14q11.2   [Description]    (hg19-Feb_2009)
EnsemblOR4K2 - 14q11.2 [CytoView hg19]  OR4K2 - 14q11.2 [CytoView hg38]
Mapping of homologs : NCBIOR4K2 [Mapview hg19]  OR4K2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136941 BC136942
RefSeq transcript (Entrez)NM_001005501
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR4K2
Cluster EST : UnigeneHs.551345 [ NCBI ]
CGAP (NCI)Hs.551345
Alternative Splicing GalleryENSG00000165762
Gene ExpressionOR4K2 [ NCBI-GEO ]   OR4K2 [ EBI - ARRAY_EXPRESS ]   OR4K2 [ SEEK ]   OR4K2 [ MEM ]
Gene Expression Viewer (FireBrowse)OR4K2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390431
GTEX Portal (Tissue expression)OR4K2
Human Protein AtlasENSG00000165762-OR4K2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGD2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGD2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGD2
Splice isoforms : SwissVarQ8NGD2
PhosPhoSitePlusQ8NGD2
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR4K2
DMDM Disease mutations390431
Blocks (Seattle)OR4K2
SuperfamilyQ8NGD2
Human Protein Atlas [tissue]ENSG00000165762-OR4K2 [tissue]
Peptide AtlasQ8NGD2
HPRD14980
IPIIPI00168984   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGD2
IntAct (EBI)Q8NGD2
FunCoupENSG00000165762
BioGRIDOR4K2
STRING (EMBL)OR4K2
ZODIACOR4K2
Ontologies - Pathways
QuickGOQ8NGD2
Ontology : AmiGOtransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBItransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR4K2
Atlas of Cancer Signalling NetworkOR4K2
Wikipedia pathwaysOR4K2
Orthology - Evolution
OrthoDB390431
GeneTree (enSembl)ENSG00000165762
Phylogenetic Trees/Animal Genes : TreeFamOR4K2
HOVERGENQ8NGD2
HOGENOMQ8NGD2
Homologs : HomoloGeneOR4K2
Homology/Alignments : Family Browser (UCSC)OR4K2
Gene fusions - Rearrangements
Fusion: Tumor Portal OR4K2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR4K2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR4K2
dbVarOR4K2
ClinVarOR4K2
1000_GenomesOR4K2 
Exome Variant ServerOR4K2
ExAC (Exome Aggregation Consortium)ENSG00000165762
GNOMAD BrowserENSG00000165762
Genetic variants : HAPMAP390431
Genomic Variants (DGV)OR4K2 [DGVbeta]
DECIPHEROR4K2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR4K2 
Mutations
ICGC Data PortalOR4K2 
TCGA Data PortalOR4K2 
Broad Tumor PortalOR4K2
OASIS PortalOR4K2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR4K2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR4K2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR4K2
DgiDB (Drug Gene Interaction Database)OR4K2
DoCM (Curated mutations)OR4K2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR4K2 (select a term)
intoGenOR4K2
Cancer3DOR4K2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR4K2
Genetic Testing Registry OR4K2
NextProtQ8NGD2 [Medical]
TSGene390431
GENETestsOR4K2
Target ValidationOR4K2
Huge Navigator OR4K2 [HugePedia]
snp3D : Map Gene to Disease390431
BioCentury BCIQOR4K2
ClinGenOR4K2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390431
Chemical/Pharm GKB GenePA32317
Clinical trialOR4K2
Miscellaneous
canSAR (ICR)OR4K2 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR4K2
EVEXOR4K2
GoPubMedOR4K2
iHOPOR4K2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:20:37 CET 2017

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