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OR4L1 (olfactory receptor family 4 subfamily L member 1)

Identity

Alias_namesOR4L2P
olfactory receptor, family 4, subfamily L, member 1
Other aliasOR14-28
HGNC (Hugo) OR4L1
LocusID (NCBI) 122742
Atlas_Id 71341
Location 14q11.2  [Link to chromosome band 14q11]
Location_base_pair Starts at 20060045 and ends at 20060983 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR4L1   15356
Cards
Entrez_Gene (NCBI)OR4L1  122742  olfactory receptor family 4 subfamily L member 1
AliasesOR14-28; OR4L2P
GeneCards (Weizmann)OR4L1
Ensembl hg19 (Hinxton)ENSG00000176246 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176246 [Gene_View]  chr14:20060045-20060983 [Contig_View]  OR4L1 [Vega]
ICGC DataPortalENSG00000176246
TCGA cBioPortalOR4L1
AceView (NCBI)OR4L1
Genatlas (Paris)OR4L1
WikiGenes122742
SOURCE (Princeton)OR4L1
Genetics Home Reference (NIH)OR4L1
Genomic and cartography
GoldenPath hg38 (UCSC)OR4L1  -     chr14:20060045-20060983 +  14q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR4L1  -     14q11.2   [Description]    (hg19-Feb_2009)
EnsemblOR4L1 - 14q11.2 [CytoView hg19]  OR4L1 - 14q11.2 [CytoView hg38]
Mapping of homologs : NCBIOR4L1 [Mapview hg19]  OR4L1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001004717
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR4L1
Cluster EST : UnigeneHs.553574 [ NCBI ]
CGAP (NCI)Hs.553574
Alternative Splicing GalleryENSG00000176246
Gene ExpressionOR4L1 [ NCBI-GEO ]   OR4L1 [ EBI - ARRAY_EXPRESS ]   OR4L1 [ SEEK ]   OR4L1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR4L1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)122742
GTEX Portal (Tissue expression)OR4L1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NH43   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NH43  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NH43
Splice isoforms : SwissVarQ8NH43
PhosPhoSitePlusQ8NH43
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR4L1
DMDM Disease mutations122742
Blocks (Seattle)OR4L1
SuperfamilyQ8NH43
Human Protein AtlasENSG00000176246
Peptide AtlasQ8NH43
HPRD14982
IPIIPI00169141   
Protein Interaction databases
DIP (DOE-UCLA)Q8NH43
IntAct (EBI)Q8NH43
FunCoupENSG00000176246
BioGRIDOR4L1
STRING (EMBL)OR4L1
ZODIACOR4L1
Ontologies - Pathways
QuickGOQ8NH43
Ontology : AmiGOtransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBItransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR4L1
Atlas of Cancer Signalling NetworkOR4L1
Wikipedia pathwaysOR4L1
Orthology - Evolution
OrthoDB122742
GeneTree (enSembl)ENSG00000176246
Phylogenetic Trees/Animal Genes : TreeFamOR4L1
HOVERGENQ8NH43
HOGENOMQ8NH43
Homologs : HomoloGeneOR4L1
Homology/Alignments : Family Browser (UCSC)OR4L1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR4L1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR4L1
dbVarOR4L1
ClinVarOR4L1
1000_GenomesOR4L1 
Exome Variant ServerOR4L1
ExAC (Exome Aggregation Consortium)OR4L1 (select the gene name)
Genetic variants : HAPMAP122742
Genomic Variants (DGV)OR4L1 [DGVbeta]
DECIPHEROR4L1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR4L1 
Mutations
ICGC Data PortalOR4L1 
TCGA Data PortalOR4L1 
Broad Tumor PortalOR4L1
OASIS PortalOR4L1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR4L1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR4L1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR4L1
DgiDB (Drug Gene Interaction Database)OR4L1
DoCM (Curated mutations)OR4L1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR4L1 (select a term)
intoGenOR4L1
Cancer3DOR4L1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR4L1
Genetic Testing Registry OR4L1
NextProtQ8NH43 [Medical]
TSGene122742
GENETestsOR4L1
Target ValidationOR4L1
Huge Navigator OR4L1 [HugePedia]
snp3D : Map Gene to Disease122742
BioCentury BCIQOR4L1
ClinGenOR4L1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD122742
Chemical/Pharm GKB GenePA32325
Clinical trialOR4L1
Miscellaneous
canSAR (ICR)OR4L1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR4L1
EVEXOR4L1
GoPubMedOR4L1
iHOPOR4L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:34:24 CEST 2017

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