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OR4S1 (olfactory receptor family 4 subfamily S member 1)

Identity

Alias_namesolfactory receptor, family 4, subfamily S, member 1
Other aliasOR11-100
HGNC (Hugo) OR4S1
LocusID (NCBI) 256148
Atlas_Id 71350
Location 11p11.2  [Link to chromosome band 11p11]
Location_base_pair Starts at 48306223 and ends at 48307152 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR4S1   14705
Cards
Entrez_Gene (NCBI)OR4S1  256148  olfactory receptor family 4 subfamily S member 1
AliasesOR11-100
GeneCards (Weizmann)OR4S1
Ensembl hg19 (Hinxton)ENSG00000176555 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176555 [Gene_View]  chr11:48306223-48307152 [Contig_View]  OR4S1 [Vega]
ICGC DataPortalENSG00000176555
TCGA cBioPortalOR4S1
AceView (NCBI)OR4S1
Genatlas (Paris)OR4S1
WikiGenes256148
SOURCE (Princeton)OR4S1
Genetics Home Reference (NIH)OR4S1
Genomic and cartography
GoldenPath hg38 (UCSC)OR4S1  -     chr11:48306223-48307152 +  11p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR4S1  -     11p11.2   [Description]    (hg19-Feb_2009)
EnsemblOR4S1 - 11p11.2 [CytoView hg19]  OR4S1 - 11p11.2 [CytoView hg38]
Mapping of homologs : NCBIOR4S1 [Mapview hg19]  OR4S1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001004725
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR4S1
Cluster EST : UnigeneHs.553657 [ NCBI ]
CGAP (NCI)Hs.553657
Alternative Splicing GalleryENSG00000176555
Gene ExpressionOR4S1 [ NCBI-GEO ]   OR4S1 [ EBI - ARRAY_EXPRESS ]   OR4S1 [ SEEK ]   OR4S1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR4S1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)256148
GTEX Portal (Tissue expression)OR4S1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGB4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGB4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGB4
Splice isoforms : SwissVarQ8NGB4
PhosPhoSitePlusQ8NGB4
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR4S1
DMDM Disease mutations256148
Blocks (Seattle)OR4S1
SuperfamilyQ8NGB4
Human Protein AtlasENSG00000176555
Peptide AtlasQ8NGB4
HPRD14987
IPIIPI00168967   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGB4
IntAct (EBI)Q8NGB4
FunCoupENSG00000176555
BioGRIDOR4S1
STRING (EMBL)OR4S1
ZODIACOR4S1
Ontologies - Pathways
QuickGOQ8NGB4
Ontology : AmiGOtransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBItransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR4S1
Atlas of Cancer Signalling NetworkOR4S1
Wikipedia pathwaysOR4S1
Orthology - Evolution
OrthoDB256148
GeneTree (enSembl)ENSG00000176555
Phylogenetic Trees/Animal Genes : TreeFamOR4S1
HOVERGENQ8NGB4
HOGENOMQ8NGB4
Homologs : HomoloGeneOR4S1
Homology/Alignments : Family Browser (UCSC)OR4S1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR4S1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR4S1
dbVarOR4S1
ClinVarOR4S1
1000_GenomesOR4S1 
Exome Variant ServerOR4S1
ExAC (Exome Aggregation Consortium)OR4S1 (select the gene name)
Genetic variants : HAPMAP256148
Genomic Variants (DGV)OR4S1 [DGVbeta]
DECIPHEROR4S1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR4S1 
Mutations
ICGC Data PortalOR4S1 
TCGA Data PortalOR4S1 
Broad Tumor PortalOR4S1
OASIS PortalOR4S1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR4S1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR4S1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR4S1
DgiDB (Drug Gene Interaction Database)OR4S1
DoCM (Curated mutations)OR4S1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR4S1 (select a term)
intoGenOR4S1
Cancer3DOR4S1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR4S1
Genetic Testing Registry OR4S1
NextProtQ8NGB4 [Medical]
TSGene256148
GENETestsOR4S1
Target ValidationOR4S1
Huge Navigator OR4S1 [HugePedia]
snp3D : Map Gene to Disease256148
BioCentury BCIQOR4S1
ClinGenOR4S1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD256148
Chemical/Pharm GKB GenePA32344
Clinical trialOR4S1
Miscellaneous
canSAR (ICR)OR4S1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR4S1
EVEXOR4S1
GoPubMedOR4S1
iHOPOR4S1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:33:13 CEST 2017

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