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OR4S2 (olfactory receptor, family 4, subfamily S, member 2)

Identity

Alias_namesOR4S2P
olfactory receptor, family 4, subfamily S, member 2 pseudogene
olfactory receptor, family 4, subfamily S, member 2
Alias_symbol (synonym)OST725
Other aliasOR11-137
HGNC (Hugo) OR4S2
LocusID (NCBI) 219431
Atlas_Id 71351
Location 11q11  [Link to chromosome band 11q11]
Location_base_pair Starts at 55418380 and ends at 55419315 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR4S2   15183
Cards
Entrez_Gene (NCBI)OR4S2  219431  olfactory receptor, family 4, subfamily S, member 2
AliasesOR11-137; OR4S2P; OST725
GeneCards (Weizmann)OR4S2
Ensembl hg19 (Hinxton)ENSG00000174982 [Gene_View]  chr11:55418380-55419315 [Contig_View]  OR4S2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000174982 [Gene_View]  chr11:55418380-55419315 [Contig_View]  OR4S2 [Vega]
ICGC DataPortalENSG00000174982
TCGA cBioPortalOR4S2
AceView (NCBI)OR4S2
Genatlas (Paris)OR4S2
WikiGenes219431
SOURCE (Princeton)OR4S2
Genetics Home Reference (NIH)OR4S2
Genomic and cartography
GoldenPath hg19 (UCSC)OR4S2  -     chr11:55418380-55419315 +  11q11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR4S2  -     11q11   [Description]    (hg38-Dec_2013)
EnsemblOR4S2 - 11q11 [CytoView hg19]  OR4S2 - 11q11 [CytoView hg38]
Mapping of homologs : NCBIOR4S2 [Mapview hg19]  OR4S2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC141531
RefSeq transcript (Entrez)NM_001004059
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)OR4S2
Cluster EST : UnigeneHs.553621 [ NCBI ]
CGAP (NCI)Hs.553621
Alternative Splicing GalleryENSG00000174982
Gene ExpressionOR4S2 [ NCBI-GEO ]   OR4S2 [ EBI - ARRAY_EXPRESS ]   OR4S2 [ SEEK ]   OR4S2 [ MEM ]
Gene Expression Viewer (FireBrowse)OR4S2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219431
GTEX Portal (Tissue expression)OR4S2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NH73   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NH73  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NH73
Splice isoforms : SwissVarQ8NH73
PhosPhoSitePlusQ8NH73
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR4S2
DMDM Disease mutations219431
Blocks (Seattle)OR4S2
SuperfamilyQ8NH73
Human Protein AtlasENSG00000174982
Peptide AtlasQ8NH73
HPRD14988
IPIIPI00169187   
Protein Interaction databases
DIP (DOE-UCLA)Q8NH73
IntAct (EBI)Q8NH73
FunCoupENSG00000174982
BioGRIDOR4S2
STRING (EMBL)OR4S2
ZODIACOR4S2
Ontologies - Pathways
QuickGOQ8NH73
Ontology : AmiGOtransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBItransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR4S2
Atlas of Cancer Signalling NetworkOR4S2
Wikipedia pathwaysOR4S2
Orthology - Evolution
OrthoDB219431
GeneTree (enSembl)ENSG00000174982
Phylogenetic Trees/Animal Genes : TreeFamOR4S2
HOVERGENQ8NH73
HOGENOMQ8NH73
Homologs : HomoloGeneOR4S2
Homology/Alignments : Family Browser (UCSC)OR4S2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR4S2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR4S2
dbVarOR4S2
ClinVarOR4S2
1000_GenomesOR4S2 
Exome Variant ServerOR4S2
ExAC (Exome Aggregation Consortium)OR4S2 (select the gene name)
Genetic variants : HAPMAP219431
Genomic Variants (DGV)OR4S2 [DGVbeta]
DECIPHER (Syndromes)11:55418380-55419315  ENSG00000174982
CONAN: Copy Number AnalysisOR4S2 
Mutations
ICGC Data PortalOR4S2 
TCGA Data PortalOR4S2 
Broad Tumor PortalOR4S2
OASIS PortalOR4S2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR4S2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR4S2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR4S2
DgiDB (Drug Gene Interaction Database)OR4S2
DoCM (Curated mutations)OR4S2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR4S2 (select a term)
intoGenOR4S2
Cancer3DOR4S2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR4S2
Genetic Testing Registry OR4S2
NextProtQ8NH73 [Medical]
TSGene219431
GENETestsOR4S2
Huge Navigator OR4S2 [HugePedia]
snp3D : Map Gene to Disease219431
BioCentury BCIQOR4S2
ClinGenOR4S2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219431
Chemical/Pharm GKB GenePA32345
Clinical trialOR4S2
Miscellaneous
canSAR (ICR)OR4S2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR4S2
EVEXOR4S2
GoPubMedOR4S2
iHOPOR4S2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:36:42 CET 2017

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