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OR4X1 (olfactory receptor, family 4, subfamily X, member 1 (gene/pseudogene))

Identity

Alias_namesolfactory receptor, family 4, subfamily X, member 1
olfactory receptor, family 4, subfamily X, member 1 (gene/pseudogene)
Other aliasOR11-104
HGNC (Hugo) OR4X1
LocusID (NCBI) 390113
Atlas_Id 71352
Location 11p11.2  [Link to chromosome band 11p11]
Location_base_pair Starts at 48285413 and ends at 48286330 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR4X1   14854
Cards
Entrez_Gene (NCBI)OR4X1  390113  olfactory receptor, family 4, subfamily X, member 1 (gene/pseudogene)
AliasesOR11-104
GeneCards (Weizmann)OR4X1
Ensembl hg19 (Hinxton)ENSG00000176567 [Gene_View]  chr11:48285413-48286330 [Contig_View]  OR4X1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000176567 [Gene_View]  chr11:48285413-48286330 [Contig_View]  OR4X1 [Vega]
ICGC DataPortalENSG00000176567
TCGA cBioPortalOR4X1
AceView (NCBI)OR4X1
Genatlas (Paris)OR4X1
WikiGenes390113
SOURCE (Princeton)OR4X1
Genetics Home Reference (NIH)OR4X1
Genomic and cartography
GoldenPath hg19 (UCSC)OR4X1  -     chr11:48285413-48286330 +  11p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR4X1  -     11p11.2   [Description]    (hg38-Dec_2013)
EnsemblOR4X1 - 11p11.2 [CytoView hg19]  OR4X1 - 11p11.2 [CytoView hg38]
Mapping of homologs : NCBIOR4X1 [Mapview hg19]  OR4X1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001004726
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)OR4X1
Cluster EST : UnigeneHs.553742 [ NCBI ]
CGAP (NCI)Hs.553742
Alternative Splicing GalleryENSG00000176567
Gene ExpressionOR4X1 [ NCBI-GEO ]   OR4X1 [ EBI - ARRAY_EXPRESS ]   OR4X1 [ SEEK ]   OR4X1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR4X1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390113
GTEX Portal (Tissue expression)OR4X1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NH49   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NH49  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NH49
Splice isoforms : SwissVarQ8NH49
PhosPhoSitePlusQ8NH49
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR4X1
DMDM Disease mutations390113
Blocks (Seattle)OR4X1
SuperfamilyQ8NH49
Human Protein AtlasENSG00000176567
Peptide AtlasQ8NH49
HPRD14989
IPIIPI00303664   
Protein Interaction databases
DIP (DOE-UCLA)Q8NH49
IntAct (EBI)Q8NH49
FunCoupENSG00000176567
BioGRIDOR4X1
STRING (EMBL)OR4X1
ZODIACOR4X1
Ontologies - Pathways
QuickGOQ8NH49
Ontology : AmiGOtransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBItransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR4X1
Atlas of Cancer Signalling NetworkOR4X1
Wikipedia pathwaysOR4X1
Orthology - Evolution
OrthoDB390113
GeneTree (enSembl)ENSG00000176567
Phylogenetic Trees/Animal Genes : TreeFamOR4X1
HOVERGENQ8NH49
HOGENOMQ8NH49
Homologs : HomoloGeneOR4X1
Homology/Alignments : Family Browser (UCSC)OR4X1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR4X1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR4X1
dbVarOR4X1
ClinVarOR4X1
1000_GenomesOR4X1 
Exome Variant ServerOR4X1
ExAC (Exome Aggregation Consortium)OR4X1 (select the gene name)
Genetic variants : HAPMAP390113
Genomic Variants (DGV)OR4X1 [DGVbeta]
DECIPHER (Syndromes)11:48285413-48286330  ENSG00000176567
CONAN: Copy Number AnalysisOR4X1 
Mutations
ICGC Data PortalOR4X1 
TCGA Data PortalOR4X1 
Broad Tumor PortalOR4X1
OASIS PortalOR4X1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR4X1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR4X1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR4X1
DgiDB (Drug Gene Interaction Database)OR4X1
DoCM (Curated mutations)OR4X1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR4X1 (select a term)
intoGenOR4X1
Cancer3DOR4X1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR4X1
Genetic Testing Registry OR4X1
NextProtQ8NH49 [Medical]
TSGene390113
GENETestsOR4X1
Huge Navigator OR4X1 [HugePedia]
snp3D : Map Gene to Disease390113
BioCentury BCIQOR4X1
ClinGenOR4X1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390113
Chemical/Pharm GKB GenePA32350
Clinical trialOR4X1
Miscellaneous
canSAR (ICR)OR4X1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR4X1
EVEXOR4X1
GoPubMedOR4X1
iHOPOR4X1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:36:42 CET 2017

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