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OR4X2 (olfactory receptor family 4 subfamily X member 2 (gene/pseudogene))

Identity

Alias_namesolfactory receptor, family 4, subfamily X, member 2 (gene/pseudogene)
Other aliasOR11-105
HGNC (Hugo) OR4X2
LocusID (NCBI) 119764
Atlas_Id 71353
Location 11p11.2  [Link to chromosome band 11p11]
Location_base_pair Starts at 48245104 and ends at 48246015 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR4X2   15184
Cards
Entrez_Gene (NCBI)OR4X2  119764  olfactory receptor family 4 subfamily X member 2 (gene/pseudogene)
AliasesOR11-105
GeneCards (Weizmann)OR4X2
Ensembl hg19 (Hinxton)ENSG00000172208 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172208 [Gene_View]  chr11:48245104-48246015 [Contig_View]  OR4X2 [Vega]
ICGC DataPortalENSG00000172208
TCGA cBioPortalOR4X2
AceView (NCBI)OR4X2
Genatlas (Paris)OR4X2
WikiGenes119764
SOURCE (Princeton)OR4X2
Genetics Home Reference (NIH)OR4X2
Genomic and cartography
GoldenPath hg38 (UCSC)OR4X2  -     chr11:48245104-48246015 +  11p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR4X2  -     11p11.2   [Description]    (hg19-Feb_2009)
EnsemblOR4X2 - 11p11.2 [CytoView hg19]  OR4X2 - 11p11.2 [CytoView hg38]
Mapping of homologs : NCBIOR4X2 [Mapview hg19]  OR4X2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136935 BC136936
RefSeq transcript (Entrez)NM_001004727
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR4X2
Cluster EST : UnigeneHs.553565 [ NCBI ]
CGAP (NCI)Hs.553565
Alternative Splicing GalleryENSG00000172208
Gene ExpressionOR4X2 [ NCBI-GEO ]   OR4X2 [ EBI - ARRAY_EXPRESS ]   OR4X2 [ SEEK ]   OR4X2 [ MEM ]
Gene Expression Viewer (FireBrowse)OR4X2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)119764
GTEX Portal (Tissue expression)OR4X2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGF9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGF9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGF9
Splice isoforms : SwissVarQ8NGF9
PhosPhoSitePlusQ8NGF9
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR4X2
DMDM Disease mutations119764
Blocks (Seattle)OR4X2
SuperfamilyQ8NGF9
Human Protein AtlasENSG00000172208
Peptide AtlasQ8NGF9
HPRD14990
IPIIPI00303395   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGF9
IntAct (EBI)Q8NGF9
FunCoupENSG00000172208
BioGRIDOR4X2
STRING (EMBL)OR4X2
ZODIACOR4X2
Ontologies - Pathways
QuickGOQ8NGF9
Ontology : AmiGOtransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBItransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR4X2
Atlas of Cancer Signalling NetworkOR4X2
Wikipedia pathwaysOR4X2
Orthology - Evolution
OrthoDB119764
GeneTree (enSembl)ENSG00000172208
Phylogenetic Trees/Animal Genes : TreeFamOR4X2
HOVERGENQ8NGF9
HOGENOMQ8NGF9
Homologs : HomoloGeneOR4X2
Homology/Alignments : Family Browser (UCSC)OR4X2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR4X2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR4X2
dbVarOR4X2
ClinVarOR4X2
1000_GenomesOR4X2 
Exome Variant ServerOR4X2
ExAC (Exome Aggregation Consortium)OR4X2 (select the gene name)
Genetic variants : HAPMAP119764
Genomic Variants (DGV)OR4X2 [DGVbeta]
DECIPHEROR4X2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR4X2 
Mutations
ICGC Data PortalOR4X2 
TCGA Data PortalOR4X2 
Broad Tumor PortalOR4X2
OASIS PortalOR4X2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR4X2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR4X2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR4X2
DgiDB (Drug Gene Interaction Database)OR4X2
DoCM (Curated mutations)OR4X2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR4X2 (select a term)
intoGenOR4X2
Cancer3DOR4X2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR4X2
Genetic Testing Registry OR4X2
NextProtQ8NGF9 [Medical]
TSGene119764
GENETestsOR4X2
Target ValidationOR4X2
Huge Navigator OR4X2 [HugePedia]
snp3D : Map Gene to Disease119764
BioCentury BCIQOR4X2
ClinGenOR4X2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD119764
Chemical/Pharm GKB GenePA32351
Clinical trialOR4X2
Miscellaneous
canSAR (ICR)OR4X2 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR4X2
EVEXOR4X2
GoPubMedOR4X2
iHOPOR4X2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:34:26 CEST 2017

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