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OR4X2 (olfactory receptor family 4 subfamily X member 2 (gene/pseudogene))

Identity

Alias (NCBI)OR11-105
HGNC (Hugo) OR4X2
HGNC Previous nameolfactory receptor, family 4, subfamily X, member 2 (gene/pseudogene)
LocusID (NCBI) 119764
Atlas_Id 71353
Location 11p11.2  [Link to chromosome band 11p11]
Location_base_pair Starts at 48245104 and ends at 48246015 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)OR4X2   15184
Cards
Entrez_Gene (NCBI)OR4X2    olfactory receptor family 4 subfamily X member 2 (gene/pseudogene)
AliasesOR11-105
GeneCards (Weizmann)OR4X2
Ensembl hg19 (Hinxton)ENSG00000172208 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172208 [Gene_View]  ENSG00000172208 [Sequence]  chr11:48245104-48246015 [Contig_View]  OR4X2 [Vega]
ICGC DataPortalENSG00000172208
TCGA cBioPortalOR4X2
AceView (NCBI)OR4X2
Genatlas (Paris)OR4X2
SOURCE (Princeton)OR4X2
Genetics Home Reference (NIH)OR4X2
Genomic and cartography
GoldenPath hg38 (UCSC)OR4X2  -     chr11:48245104-48246015 +  11p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR4X2  -     11p11.2   [Description]    (hg19-Feb_2009)
GoldenPathOR4X2 - 11p11.2 [CytoView hg19]  OR4X2 - 11p11.2 [CytoView hg38]
ImmunoBaseENSG00000172208
genome Data Viewer NCBIOR4X2 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC136935 BC136936
RefSeq transcript (Entrez)NM_001004727
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR4X2
Alternative Splicing GalleryENSG00000172208
Gene ExpressionOR4X2 [ NCBI-GEO ]   OR4X2 [ EBI - ARRAY_EXPRESS ]   OR4X2 [ SEEK ]   OR4X2 [ MEM ]
Gene Expression Viewer (FireBrowse)OR4X2 [ Firebrowse - Broad ]
GenevisibleExpression of OR4X2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)119764
GTEX Portal (Tissue expression)OR4X2
Human Protein AtlasENSG00000172208-OR4X2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGF9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGF9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGF9
Splice isoforms : SwissVarQ8NGF9
PhosPhoSitePlusQ8NGF9
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)7tm_4 (PF13853)   
Domain families : Pfam (NCBI)pfam13853   
Conserved Domain (NCBI)OR4X2
Blocks (Seattle)OR4X2
SuperfamilyQ8NGF9
Human Protein Atlas [tissue]ENSG00000172208-OR4X2 [tissue]
Peptide AtlasQ8NGF9
HPRD14990
IPIIPI00303395   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGF9
IntAct (EBI)Q8NGF9
BioGRIDOR4X2
STRING (EMBL)OR4X2
ZODIACOR4X2
Ontologies - Pathways
QuickGOQ8NGF9
Ontology : AmiGOG protein-coupled receptor activity  olfactory receptor activity  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG protein-coupled receptor activity  olfactory receptor activity  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR4X2
Atlas of Cancer Signalling NetworkOR4X2
Wikipedia pathwaysOR4X2
Orthology - Evolution
OrthoDB119764
GeneTree (enSembl)ENSG00000172208
Phylogenetic Trees/Animal Genes : TreeFamOR4X2
HOGENOMQ8NGF9
Homologs : HomoloGeneOR4X2
Homology/Alignments : Family Browser (UCSC)OR4X2
Gene fusions - Rearrangements
Fusion : QuiverOR4X2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR4X2 [hg38]
dbVarOR4X2
ClinVarOR4X2
MonarchOR4X2
1000_GenomesOR4X2 
Exome Variant ServerOR4X2
GNOMAD BrowserENSG00000172208
Varsome BrowserOR4X2
Genomic Variants (DGV)OR4X2 [DGVbeta]
DECIPHEROR4X2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR4X2 
Mutations
ICGC Data PortalOR4X2 
TCGA Data PortalOR4X2 
Broad Tumor PortalOR4X2
OASIS PortalOR4X2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR4X2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DOR4X2
Mutations and Diseases : HGMDOR4X2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR4X2
DgiDB (Drug Gene Interaction Database)OR4X2
DoCM (Curated mutations)OR4X2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR4X2 (select a term)
intoGenOR4X2
Cancer3DOR4X2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR4X2
MedgenOR4X2
Genetic Testing Registry OR4X2
NextProtQ8NGF9 [Medical]
GENETestsOR4X2
Target ValidationOR4X2
Huge Navigator OR4X2 [HugePedia]
ClinGenOR4X2
Clinical trials, drugs, therapy
MyCancerGenomeOR4X2
Protein Interactions : CTD
Pharm GKB GenePA32351
Clinical trialOR4X2
Miscellaneous
canSAR (ICR)OR4X2 (select the gene name)
HarmonizomeOR4X2
DataMed IndexOR4X2
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR4X2
EVEXOR4X2
GoPubMedOR4X2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:20:46 CET 2020

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