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OR51F1 (olfactory receptor family 51 subfamily F member 1 (gene/pseudogene))

Identity

Alias_namesOR51F1P
olfactory receptor, family 51, subfamily F, member 1 (gene/pseudogene)
Other aliasOR11-21
HGNC (Hugo) OR51F1
LocusID (NCBI) 256892
Atlas_Id 71362
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 4768979 and ends at 4769917 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR51F1   15196
Cards
Entrez_Gene (NCBI)OR51F1  256892  olfactory receptor family 51 subfamily F member 1 (gene/pseudogene)
AliasesOR11-21; OR51F1P
GeneCards (Weizmann)OR51F1
Ensembl hg19 (Hinxton)ENSG00000188069 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188069 [Gene_View]  chr11:4768979-4769917 [Contig_View]  OR51F1 [Vega]
ICGC DataPortalENSG00000188069
TCGA cBioPortalOR51F1
AceView (NCBI)OR51F1
Genatlas (Paris)OR51F1
WikiGenes256892
SOURCE (Princeton)OR51F1
Genetics Home Reference (NIH)OR51F1
Genomic and cartography
GoldenPath hg38 (UCSC)OR51F1  -     chr11:4768979-4769917 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR51F1  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblOR51F1 - 11p15.4 [CytoView hg19]  OR51F1 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIOR51F1 [Mapview hg19]  OR51F1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001004752
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR51F1
Cluster EST : UnigeneHs.553659 [ NCBI ]
CGAP (NCI)Hs.553659
Alternative Splicing GalleryENSG00000188069
Gene ExpressionOR51F1 [ NCBI-GEO ]   OR51F1 [ EBI - ARRAY_EXPRESS ]   OR51F1 [ SEEK ]   OR51F1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR51F1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)256892
GTEX Portal (Tissue expression)OR51F1
Human Protein AtlasENSG00000188069-OR51F1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NGY5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NGY5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NGY5
Splice isoforms : SwissVarA6NGY5
PhosPhoSitePlusA6NGY5
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR51F1
DMDM Disease mutations256892
Blocks (Seattle)OR51F1
SuperfamilyA6NGY5
Human Protein Atlas [tissue]ENSG00000188069-OR51F1 [tissue]
Peptide AtlasA6NGY5
HPRD17737
IPIIPI00160814   IPI00936822   
Protein Interaction databases
DIP (DOE-UCLA)A6NGY5
IntAct (EBI)A6NGY5
FunCoupENSG00000188069
BioGRIDOR51F1
STRING (EMBL)OR51F1
ZODIACOR51F1
Ontologies - Pathways
QuickGOA6NGY5
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR51F1
Atlas of Cancer Signalling NetworkOR51F1
Wikipedia pathwaysOR51F1
Orthology - Evolution
OrthoDB256892
GeneTree (enSembl)ENSG00000188069
Phylogenetic Trees/Animal Genes : TreeFamOR51F1
HOVERGENA6NGY5
HOGENOMA6NGY5
Homologs : HomoloGeneOR51F1
Homology/Alignments : Family Browser (UCSC)OR51F1
Gene fusions - Rearrangements
Tumor Fusion PortalOR51F1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR51F1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR51F1
dbVarOR51F1
ClinVarOR51F1
1000_GenomesOR51F1 
Exome Variant ServerOR51F1
ExAC (Exome Aggregation Consortium)ENSG00000188069
GNOMAD BrowserENSG00000188069
Genetic variants : HAPMAP256892
Genomic Variants (DGV)OR51F1 [DGVbeta]
DECIPHEROR51F1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR51F1 
Mutations
ICGC Data PortalOR51F1 
TCGA Data PortalOR51F1 
Broad Tumor PortalOR51F1
OASIS PortalOR51F1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR51F1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR51F1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR51F1
DgiDB (Drug Gene Interaction Database)OR51F1
DoCM (Curated mutations)OR51F1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR51F1 (select a term)
intoGenOR51F1
Cancer3DOR51F1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR51F1
MedgenOR51F1
Genetic Testing Registry OR51F1
NextProtA6NGY5 [Medical]
TSGene256892
GENETestsOR51F1
Target ValidationOR51F1
Huge Navigator OR51F1 [HugePedia]
snp3D : Map Gene to Disease256892
BioCentury BCIQOR51F1
ClinGenOR51F1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD256892
Chemical/Pharm GKB GenePA32374
Clinical trialOR51F1
Miscellaneous
canSAR (ICR)OR51F1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR51F1
EVEXOR51F1
GoPubMedOR51F1
iHOPOR51F1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:24:31 CET 2017

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