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OR51T1 (olfactory receptor family 51 subfamily T member 1)

Identity

Alias (NCBI)OR11-26
HGNC (Hugo) OR51T1
HGNC Previous nameolfactory receptor, family 51, subfamily T, member 1
LocusID (NCBI) 401665
Atlas_Id 71372
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 4881819 and ends at 4882883 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)OR51T1   15205
Cards
Entrez_Gene (NCBI)OR51T1    olfactory receptor family 51 subfamily T member 1
AliasesOR11-26
GeneCards (Weizmann)OR51T1
Ensembl hg19 (Hinxton)ENSG00000176900 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176900 [Gene_View]  ENSG00000176900 [Sequence]  chr11:4881819-4882883 [Contig_View]  OR51T1 [Vega]
ICGC DataPortalENSG00000176900
TCGA cBioPortalOR51T1
AceView (NCBI)OR51T1
Genatlas (Paris)OR51T1
SOURCE (Princeton)OR51T1
Genetics Home Reference (NIH)OR51T1
Genomic and cartography
GoldenPath hg38 (UCSC)OR51T1  -     chr11:4881819-4882883 +  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR51T1  -     11p15.4   [Description]    (hg19-Feb_2009)
GoldenPathOR51T1 - 11p15.4 [CytoView hg19]  OR51T1 - 11p15.4 [CytoView hg38]
ImmunoBaseENSG00000176900
genome Data Viewer NCBIOR51T1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001004759
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR51T1
Alternative Splicing GalleryENSG00000176900
Gene ExpressionOR51T1 [ NCBI-GEO ]   OR51T1 [ EBI - ARRAY_EXPRESS ]   OR51T1 [ SEEK ]   OR51T1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR51T1 [ Firebrowse - Broad ]
GenevisibleExpression of OR51T1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401665
GTEX Portal (Tissue expression)OR51T1
Human Protein AtlasENSG00000176900-OR51T1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGJ9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGJ9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGJ9
Splice isoforms : SwissVarQ8NGJ9
PhosPhoSitePlusQ8NGJ9
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)7tm_4 (PF13853)   
Domain families : Pfam (NCBI)pfam13853   
Conserved Domain (NCBI)OR51T1
Blocks (Seattle)OR51T1
SuperfamilyQ8NGJ9
Human Protein Atlas [tissue]ENSG00000176900-OR51T1 [tissue]
Peptide AtlasQ8NGJ9
HPRD17740
IPIIPI00402207   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGJ9
IntAct (EBI)Q8NGJ9
BioGRIDOR51T1
STRING (EMBL)OR51T1
ZODIACOR51T1
Ontologies - Pathways
QuickGOQ8NGJ9
Ontology : AmiGOG protein-coupled receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG protein-coupled receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR51T1
Atlas of Cancer Signalling NetworkOR51T1
Wikipedia pathwaysOR51T1
Orthology - Evolution
OrthoDB401665
GeneTree (enSembl)ENSG00000176900
Phylogenetic Trees/Animal Genes : TreeFamOR51T1
HOGENOMQ8NGJ9
Homologs : HomoloGeneOR51T1
Homology/Alignments : Family Browser (UCSC)OR51T1
Gene fusions - Rearrangements
Fusion : QuiverOR51T1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR51T1 [hg38]
dbVarOR51T1
ClinVarOR51T1
MonarchOR51T1
1000_GenomesOR51T1 
Exome Variant ServerOR51T1
GNOMAD BrowserENSG00000176900
Varsome BrowserOR51T1
Genomic Variants (DGV)OR51T1 [DGVbeta]
DECIPHEROR51T1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR51T1 
Mutations
ICGC Data PortalOR51T1 
TCGA Data PortalOR51T1 
Broad Tumor PortalOR51T1
OASIS PortalOR51T1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR51T1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DOR51T1
Mutations and Diseases : HGMDOR51T1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR51T1
DgiDB (Drug Gene Interaction Database)OR51T1
DoCM (Curated mutations)OR51T1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR51T1 (select a term)
intoGenOR51T1
Cancer3DOR51T1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR51T1
MedgenOR51T1
Genetic Testing Registry OR51T1
NextProtQ8NGJ9 [Medical]
GENETestsOR51T1
Target ValidationOR51T1
Huge Navigator OR51T1 [HugePedia]
ClinGenOR51T1
Clinical trials, drugs, therapy
MyCancerGenomeOR51T1
Protein Interactions : CTD
Pharm GKB GenePA32391
Clinical trialOR51T1
Miscellaneous
canSAR (ICR)OR51T1 (select the gene name)
HarmonizomeOR51T1
DataMed IndexOR51T1
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR51T1
EVEXOR51T1
GoPubMedOR51T1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:20:51 CET 2020

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