Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OR51T1 (olfactory receptor, family 51, subfamily T, member 1)

Identity

Alias_namesolfactory receptor, family 51, subfamily T, member 1
Other aliasOR11-26
HGNC (Hugo) OR51T1
LocusID (NCBI) 401665
Atlas_Id 71372
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 4903049 and ends at 4904113 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR51T1   15205
Cards
Entrez_Gene (NCBI)OR51T1  401665  olfactory receptor, family 51, subfamily T, member 1
AliasesOR11-26
GeneCards (Weizmann)OR51T1
Ensembl hg19 (Hinxton)ENSG00000176900 [Gene_View]  chr11:4903049-4904113 [Contig_View]  OR51T1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000176900 [Gene_View]  chr11:4903049-4904113 [Contig_View]  OR51T1 [Vega]
ICGC DataPortalENSG00000176900
TCGA cBioPortalOR51T1
AceView (NCBI)OR51T1
Genatlas (Paris)OR51T1
WikiGenes401665
SOURCE (Princeton)OR51T1
Genetics Home Reference (NIH)OR51T1
Genomic and cartography
GoldenPath hg19 (UCSC)OR51T1  -     chr11:4903049-4904113 +  11p15.4   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR51T1  -     11p15.4   [Description]    (hg38-Dec_2013)
EnsemblOR51T1 - 11p15.4 [CytoView hg19]  OR51T1 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIOR51T1 [Mapview hg19]  OR51T1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC156307 BC172458
RefSeq transcript (Entrez)NM_001004759
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)OR51T1
Cluster EST : UnigeneHs.553804 [ NCBI ]
CGAP (NCI)Hs.553804
Alternative Splicing GalleryENSG00000176900
Gene ExpressionOR51T1 [ NCBI-GEO ]   OR51T1 [ EBI - ARRAY_EXPRESS ]   OR51T1 [ SEEK ]   OR51T1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR51T1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401665
GTEX Portal (Tissue expression)OR51T1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGJ9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGJ9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGJ9
Splice isoforms : SwissVarQ8NGJ9
PhosPhoSitePlusQ8NGJ9
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Conserved Domain (NCBI)OR51T1
DMDM Disease mutations401665
Blocks (Seattle)OR51T1
SuperfamilyQ8NGJ9
Human Protein AtlasENSG00000176900
Peptide AtlasQ8NGJ9
HPRD17740
IPIIPI00402207   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGJ9
IntAct (EBI)Q8NGJ9
FunCoupENSG00000176900
BioGRIDOR51T1
STRING (EMBL)OR51T1
ZODIACOR51T1
Ontologies - Pathways
QuickGOQ8NGJ9
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR51T1
Atlas of Cancer Signalling NetworkOR51T1
Wikipedia pathwaysOR51T1
Orthology - Evolution
OrthoDB401665
GeneTree (enSembl)ENSG00000176900
Phylogenetic Trees/Animal Genes : TreeFamOR51T1
HOVERGENQ8NGJ9
HOGENOMQ8NGJ9
Homologs : HomoloGeneOR51T1
Homology/Alignments : Family Browser (UCSC)OR51T1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR51T1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR51T1
dbVarOR51T1
ClinVarOR51T1
1000_GenomesOR51T1 
Exome Variant ServerOR51T1
ExAC (Exome Aggregation Consortium)OR51T1 (select the gene name)
Genetic variants : HAPMAP401665
Genomic Variants (DGV)OR51T1 [DGVbeta]
DECIPHER (Syndromes)11:4903049-4904113  ENSG00000176900
CONAN: Copy Number AnalysisOR51T1 
Mutations
ICGC Data PortalOR51T1 
TCGA Data PortalOR51T1 
Broad Tumor PortalOR51T1
OASIS PortalOR51T1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR51T1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR51T1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR51T1
DgiDB (Drug Gene Interaction Database)OR51T1
DoCM (Curated mutations)OR51T1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR51T1 (select a term)
intoGenOR51T1
Cancer3DOR51T1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR51T1
Genetic Testing Registry OR51T1
NextProtQ8NGJ9 [Medical]
TSGene401665
GENETestsOR51T1
Huge Navigator OR51T1 [HugePedia]
snp3D : Map Gene to Disease401665
BioCentury BCIQOR51T1
ClinGenOR51T1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401665
Chemical/Pharm GKB GenePA32391
Clinical trialOR51T1
Miscellaneous
canSAR (ICR)OR51T1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR51T1
EVEXOR51T1
GoPubMedOR51T1
iHOPOR51T1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:36:46 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.