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OR52A1 (olfactory receptor, family 52, subfamily A, member 1)

Identity

Alias_namesolfactory receptor, family 52, subfamily A, member 1
Alias_symbol (synonym)HPFH1OR
Other alias
HGNC (Hugo) OR52A1
LocusID (NCBI) 23538
Atlas_Id 71374
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 5172661 and ends at 5173599 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR52A1   8318
Cards
Entrez_Gene (NCBI)OR52A1  23538  olfactory receptor, family 52, subfamily A, member 1
AliasesHPFH1OR
GeneCards (Weizmann)OR52A1
Ensembl hg19 (Hinxton)ENSG00000182070 [Gene_View]  chr11:5172661-5173599 [Contig_View]  OR52A1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000182070 [Gene_View]  chr11:5172661-5173599 [Contig_View]  OR52A1 [Vega]
ICGC DataPortalENSG00000182070
TCGA cBioPortalOR52A1
AceView (NCBI)OR52A1
Genatlas (Paris)OR52A1
WikiGenes23538
SOURCE (Princeton)OR52A1
Genetics Home Reference (NIH)OR52A1
Genomic and cartography
GoldenPath hg19 (UCSC)OR52A1  -     chr11:5172661-5173599 -  11p15.4   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR52A1  -     11p15.4   [Description]    (hg38-Dec_2013)
EnsemblOR52A1 - 11p15.4 [CytoView hg19]  OR52A1 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIOR52A1 [Mapview hg19]  OR52A1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC111691 BC111722 BC140283
RefSeq transcript (Entrez)NM_012375
RefSeq genomic (Entrez)NC_000011 NC_018922 NG_027733 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)OR52A1
Cluster EST : UnigeneHs.553520 [ NCBI ]
CGAP (NCI)Hs.553520
Alternative Splicing GalleryENSG00000182070
Gene ExpressionOR52A1 [ NCBI-GEO ]   OR52A1 [ EBI - ARRAY_EXPRESS ]   OR52A1 [ SEEK ]   OR52A1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR52A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23538
GTEX Portal (Tissue expression)OR52A1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UKL2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UKL2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UKL2
Splice isoforms : SwissVarQ9UKL2
PhosPhoSitePlusQ9UKL2
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR52A1
DMDM Disease mutations23538
Blocks (Seattle)OR52A1
SuperfamilyQ9UKL2
Human Protein AtlasENSG00000182070
Peptide AtlasQ9UKL2
HPRD17742
IPIIPI00007617   IPI00984738   
Protein Interaction databases
DIP (DOE-UCLA)Q9UKL2
IntAct (EBI)Q9UKL2
FunCoupENSG00000182070
BioGRIDOR52A1
STRING (EMBL)OR52A1
ZODIACOR52A1
Ontologies - Pathways
QuickGOQ9UKL2
Ontology : AmiGOtransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  integral component of plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBItransmembrane signaling receptor activity  G-protein coupled receptor activity  olfactory receptor activity  plasma membrane  integral component of plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR52A1
Atlas of Cancer Signalling NetworkOR52A1
Wikipedia pathwaysOR52A1
Orthology - Evolution
OrthoDB23538
GeneTree (enSembl)ENSG00000182070
Phylogenetic Trees/Animal Genes : TreeFamOR52A1
HOVERGENQ9UKL2
HOGENOMQ9UKL2
Homologs : HomoloGeneOR52A1
Homology/Alignments : Family Browser (UCSC)OR52A1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR52A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR52A1
dbVarOR52A1
ClinVarOR52A1
1000_GenomesOR52A1 
Exome Variant ServerOR52A1
ExAC (Exome Aggregation Consortium)OR52A1 (select the gene name)
Genetic variants : HAPMAP23538
Genomic Variants (DGV)OR52A1 [DGVbeta]
DECIPHER (Syndromes)11:5172661-5173599  ENSG00000182070
CONAN: Copy Number AnalysisOR52A1 
Mutations
ICGC Data PortalOR52A1 
TCGA Data PortalOR52A1 
Broad Tumor PortalOR52A1
OASIS PortalOR52A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR52A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR52A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR52A1
DgiDB (Drug Gene Interaction Database)OR52A1
DoCM (Curated mutations)OR52A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR52A1 (select a term)
intoGenOR52A1
Cancer3DOR52A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR52A1
Genetic Testing Registry OR52A1
NextProtQ9UKL2 [Medical]
TSGene23538
GENETestsOR52A1
Huge Navigator OR52A1 [HugePedia]
snp3D : Map Gene to Disease23538
BioCentury BCIQOR52A1
ClinGenOR52A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23538
Chemical/Pharm GKB GenePA32392
Clinical trialOR52A1
Miscellaneous
canSAR (ICR)OR52A1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR52A1
EVEXOR52A1
GoPubMedOR52A1
iHOPOR52A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:36:47 CET 2017

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