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OR52A4P (olfactory receptor family 52 subfamily A member 4 pseudogene)

Identity

Alias_namesOR52A4
olfactory receptor, family 52, subfamily A, member 4
olfactory receptor, family 52, subfamily A, member 4, pseudogene
Other alias
HGNC (Hugo) OR52A4P
LocusID (NCBI) 390053
Atlas_Id 76805
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 5120620 and ends at 5121617 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)OR52A4P   19579
Cards
Entrez_Gene (NCBI)OR52A4P  390053  olfactory receptor family 52 subfamily A member 4 pseudogene
AliasesOR52A4
GeneCards (Weizmann)OR52A4P
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:5120620-5121617 [Contig_View]  OR52A4P [Vega]
TCGA cBioPortalOR52A4P
AceView (NCBI)OR52A4P
Genatlas (Paris)OR52A4P
WikiGenes390053
SOURCE (Princeton)OR52A4P
Genetics Home Reference (NIH)OR52A4P
Genomic and cartography
GoldenPath hg38 (UCSC)OR52A4P  -     chr11:5120620-5121617 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR52A4P  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblOR52A4P - 11p15.4 [CytoView hg19]  OR52A4P - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIOR52A4P [Mapview hg19]  OR52A4P [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC140752
RefSeq transcript (Entrez)NM_001005222
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR52A4P
Cluster EST : UnigeneHs.553729 [ NCBI ]
CGAP (NCI)Hs.553729
Gene ExpressionOR52A4P [ NCBI-GEO ]   OR52A4P [ EBI - ARRAY_EXPRESS ]   OR52A4P [ SEEK ]   OR52A4P [ MEM ]
Gene Expression Viewer (FireBrowse)OR52A4P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390053
GTEX Portal (Tissue expression)OR52A4P
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NMU1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NMU1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NMU1
Splice isoforms : SwissVarA6NMU1
PhosPhoSitePlusA6NMU1
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR52A4P
DMDM Disease mutations390053
Blocks (Seattle)OR52A4P
SuperfamilyA6NMU1
Peptide AtlasA6NMU1
HPRD15004
IPIIPI00465221   
Protein Interaction databases
DIP (DOE-UCLA)A6NMU1
IntAct (EBI)A6NMU1
BioGRIDOR52A4P
STRING (EMBL)OR52A4P
ZODIACOR52A4P
Ontologies - Pathways
QuickGOA6NMU1
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR52A4P
Atlas of Cancer Signalling NetworkOR52A4P
Wikipedia pathwaysOR52A4P
Orthology - Evolution
OrthoDB390053
Phylogenetic Trees/Animal Genes : TreeFamOR52A4P
HOVERGENA6NMU1
HOGENOMA6NMU1
Homologs : HomoloGeneOR52A4P
Homology/Alignments : Family Browser (UCSC)OR52A4P
Gene fusions - Rearrangements
Tumor Fusion PortalOR52A4P
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR52A4P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR52A4P
dbVarOR52A4P
ClinVarOR52A4P
1000_GenomesOR52A4P 
Exome Variant ServerOR52A4P
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP390053
Genomic Variants (DGV)OR52A4P [DGVbeta]
DECIPHEROR52A4P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR52A4P 
Mutations
ICGC Data PortalOR52A4P 
TCGA Data PortalOR52A4P 
Broad Tumor PortalOR52A4P
OASIS PortalOR52A4P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDOR52A4P
BioMutasearch OR52A4P
DgiDB (Drug Gene Interaction Database)OR52A4P
DoCM (Curated mutations)OR52A4P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR52A4P (select a term)
intoGenOR52A4P
Cancer3DOR52A4P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR52A4P
MedgenOR52A4P
Genetic Testing Registry OR52A4P
NextProtA6NMU1 [Medical]
TSGene390053
GENETestsOR52A4P
Target ValidationOR52A4P
Huge Navigator OR52A4P [HugePedia]
snp3D : Map Gene to Disease390053
BioCentury BCIQOR52A4P
ClinGenOR52A4P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390053
Chemical/Pharm GKB GenePA134969174
Clinical trialOR52A4P
Miscellaneous
canSAR (ICR)OR52A4P (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR52A4P
EVEXOR52A4P
GoPubMedOR52A4P
iHOPOR52A4P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:24:34 CET 2017

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