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OR52A5 (olfactory receptor family 52 subfamily A member 5)

Identity

Alias_namesolfactory receptor, family 52, subfamily A, member 5
Other aliasOR11-33
HGNC (Hugo) OR52A5
LocusID (NCBI) 390054
Atlas_Id 71376
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 5131692 and ends at 5132642 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR52A5   19580
Cards
Entrez_Gene (NCBI)OR52A5  390054  olfactory receptor family 52 subfamily A member 5
AliasesOR11-33
GeneCards (Weizmann)OR52A5
Ensembl hg19 (Hinxton)ENSG00000171944 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171944 [Gene_View]  chr11:5131692-5132642 [Contig_View]  OR52A5 [Vega]
ICGC DataPortalENSG00000171944
TCGA cBioPortalOR52A5
AceView (NCBI)OR52A5
Genatlas (Paris)OR52A5
WikiGenes390054
SOURCE (Princeton)OR52A5
Genetics Home Reference (NIH)OR52A5
Genomic and cartography
GoldenPath hg38 (UCSC)OR52A5  -     chr11:5131692-5132642 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR52A5  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblOR52A5 - 11p15.4 [CytoView hg19]  OR52A5 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIOR52A5 [Mapview hg19]  OR52A5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY726590 BC141494
RefSeq transcript (Entrez)NM_001005160
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR52A5
Cluster EST : UnigeneHs.546593 [ NCBI ]
CGAP (NCI)Hs.546593
Alternative Splicing GalleryENSG00000171944
Gene ExpressionOR52A5 [ NCBI-GEO ]   OR52A5 [ EBI - ARRAY_EXPRESS ]   OR52A5 [ SEEK ]   OR52A5 [ MEM ]
Gene Expression Viewer (FireBrowse)OR52A5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390054
GTEX Portal (Tissue expression)OR52A5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H2C5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H2C5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H2C5
Splice isoforms : SwissVarQ9H2C5
PhosPhoSitePlusQ9H2C5
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)7TM_GPCR_Srsx (SM01381)  
Conserved Domain (NCBI)OR52A5
DMDM Disease mutations390054
Blocks (Seattle)OR52A5
SuperfamilyQ9H2C5
Human Protein AtlasENSG00000171944
Peptide AtlasQ9H2C5
HPRD15005
IPIIPI00399290   
Protein Interaction databases
DIP (DOE-UCLA)Q9H2C5
IntAct (EBI)Q9H2C5
FunCoupENSG00000171944
BioGRIDOR52A5
STRING (EMBL)OR52A5
ZODIACOR52A5
Ontologies - Pathways
QuickGOQ9H2C5
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR52A5
Atlas of Cancer Signalling NetworkOR52A5
Wikipedia pathwaysOR52A5
Orthology - Evolution
OrthoDB390054
GeneTree (enSembl)ENSG00000171944
Phylogenetic Trees/Animal Genes : TreeFamOR52A5
HOVERGENQ9H2C5
HOGENOMQ9H2C5
Homologs : HomoloGeneOR52A5
Homology/Alignments : Family Browser (UCSC)OR52A5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR52A5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR52A5
dbVarOR52A5
ClinVarOR52A5
1000_GenomesOR52A5 
Exome Variant ServerOR52A5
ExAC (Exome Aggregation Consortium)OR52A5 (select the gene name)
Genetic variants : HAPMAP390054
Genomic Variants (DGV)OR52A5 [DGVbeta]
DECIPHEROR52A5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR52A5 
Mutations
ICGC Data PortalOR52A5 
TCGA Data PortalOR52A5 
Broad Tumor PortalOR52A5
OASIS PortalOR52A5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR52A5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR52A5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR52A5
DgiDB (Drug Gene Interaction Database)OR52A5
DoCM (Curated mutations)OR52A5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR52A5 (select a term)
intoGenOR52A5
Cancer3DOR52A5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR52A5
Genetic Testing Registry OR52A5
NextProtQ9H2C5 [Medical]
TSGene390054
GENETestsOR52A5
Target ValidationOR52A5
Huge Navigator OR52A5 [HugePedia]
snp3D : Map Gene to Disease390054
BioCentury BCIQOR52A5
ClinGenOR52A5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390054
Chemical/Pharm GKB GenePA134991603
Clinical trialOR52A5
Miscellaneous
canSAR (ICR)OR52A5 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR52A5
EVEXOR52A5
GoPubMedOR52A5
iHOPOR52A5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:33:17 CEST 2017

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