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OR52B2 (olfactory receptor family 52 subfamily B member 2)

Identity

Alias_namesolfactory receptor, family 52, subfamily B, member 2
Other aliasOR11-70
HGNC (Hugo) OR52B2
LocusID (NCBI) 255725
Atlas_Id 71377
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 6169355 and ends at 6170326 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR52B2   15207
Cards
Entrez_Gene (NCBI)OR52B2  255725  olfactory receptor family 52 subfamily B member 2
AliasesOR11-70
GeneCards (Weizmann)OR52B2
Ensembl hg19 (Hinxton)ENSG00000255307 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000255307 [Gene_View]  chr11:6169355-6170326 [Contig_View]  OR52B2 [Vega]
ICGC DataPortalENSG00000255307
TCGA cBioPortalOR52B2
AceView (NCBI)OR52B2
Genatlas (Paris)OR52B2
WikiGenes255725
SOURCE (Princeton)OR52B2
Genetics Home Reference (NIH)OR52B2
Genomic and cartography
GoldenPath hg38 (UCSC)OR52B2  -     chr11:6169355-6170326 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR52B2  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblOR52B2 - 11p15.4 [CytoView hg19]  OR52B2 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIOR52B2 [Mapview hg19]  OR52B2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136732 BC136733
RefSeq transcript (Entrez)NM_001004052
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR52B2
Cluster EST : UnigeneHs.690457 [ NCBI ]
CGAP (NCI)Hs.690457
Alternative Splicing GalleryENSG00000255307
Gene ExpressionOR52B2 [ NCBI-GEO ]   OR52B2 [ EBI - ARRAY_EXPRESS ]   OR52B2 [ SEEK ]   OR52B2 [ MEM ]
Gene Expression Viewer (FireBrowse)OR52B2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)255725
GTEX Portal (Tissue expression)OR52B2
Human Protein AtlasENSG00000255307-OR52B2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96RD2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96RD2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96RD2
Splice isoforms : SwissVarQ96RD2
PhosPhoSitePlusQ96RD2
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR52B2
DMDM Disease mutations255725
Blocks (Seattle)OR52B2
SuperfamilyQ96RD2
Human Protein Atlas [tissue]ENSG00000255307-OR52B2 [tissue]
Peptide AtlasQ96RD2
HPRD15006
IPIIPI00185098   IPI00386289   
Protein Interaction databases
DIP (DOE-UCLA)Q96RD2
IntAct (EBI)Q96RD2
FunCoupENSG00000255307
BioGRIDOR52B2
STRING (EMBL)OR52B2
ZODIACOR52B2
Ontologies - Pathways
QuickGOQ96RD2
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR52B2
Atlas of Cancer Signalling NetworkOR52B2
Wikipedia pathwaysOR52B2
Orthology - Evolution
OrthoDB255725
GeneTree (enSembl)ENSG00000255307
Phylogenetic Trees/Animal Genes : TreeFamOR52B2
HOVERGENQ96RD2
HOGENOMQ96RD2
Homologs : HomoloGeneOR52B2
Homology/Alignments : Family Browser (UCSC)OR52B2
Gene fusions - Rearrangements
Fusion: Tumor Portal OR52B2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR52B2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR52B2
dbVarOR52B2
ClinVarOR52B2
1000_GenomesOR52B2 
Exome Variant ServerOR52B2
ExAC (Exome Aggregation Consortium)ENSG00000255307
GNOMAD BrowserENSG00000255307
Genetic variants : HAPMAP255725
Genomic Variants (DGV)OR52B2 [DGVbeta]
DECIPHEROR52B2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR52B2 
Mutations
ICGC Data PortalOR52B2 
TCGA Data PortalOR52B2 
Broad Tumor PortalOR52B2
OASIS PortalOR52B2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR52B2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR52B2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR52B2
DgiDB (Drug Gene Interaction Database)OR52B2
DoCM (Curated mutations)OR52B2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR52B2 (select a term)
intoGenOR52B2
Cancer3DOR52B2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR52B2
Genetic Testing Registry OR52B2
NextProtQ96RD2 [Medical]
TSGene255725
GENETestsOR52B2
Target ValidationOR52B2
Huge Navigator OR52B2 [HugePedia]
snp3D : Map Gene to Disease255725
BioCentury BCIQOR52B2
ClinGenOR52B2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD255725
Chemical/Pharm GKB GenePA32396
Clinical trialOR52B2
Miscellaneous
canSAR (ICR)OR52B2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR52B2
EVEXOR52B2
GoPubMedOR52B2
iHOPOR52B2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:20:46 CET 2017

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