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OR52B4 (olfactory receptor family 52 subfamily B member 4 (gene/pseudogene))

Identity

Alias (NCBI)OR11-3
HGNC (Hugo) OR52B4
HGNC Previous nameolfactory receptor, family 52, subfamily B, member 4 (gene/pseudogene)
LocusID (NCBI) 143496
Atlas_Id 71378
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 4367263 and ends at 4368386 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)OR52B4   15209
Cards
Entrez_Gene (NCBI)OR52B4    olfactory receptor family 52 subfamily B member 4 (gene/pseudogene)
AliasesOR11-3
GeneCards (Weizmann)OR52B4
Ensembl hg19 (Hinxton)ENSG00000221996 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000221996 [Gene_View]  ENSG00000221996 [Sequence]  chr11:4367263-4368386 [Contig_View]  OR52B4 [Vega]
ICGC DataPortalENSG00000221996
TCGA cBioPortalOR52B4
AceView (NCBI)OR52B4
Genatlas (Paris)OR52B4
SOURCE (Princeton)OR52B4
Genetics Home Reference (NIH)OR52B4
Genomic and cartography
GoldenPath hg38 (UCSC)OR52B4  -     chr11:4367263-4368386 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR52B4  -     11p15.4   [Description]    (hg19-Feb_2009)
GoldenPathOR52B4 - 11p15.4 [CytoView hg19]  OR52B4 - 11p15.4 [CytoView hg38]
ImmunoBaseENSG00000221996
genome Data Viewer NCBIOR52B4 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC140928
RefSeq transcript (Entrez)NM_001005161
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR52B4
Alternative Splicing GalleryENSG00000221996
Gene ExpressionOR52B4 [ NCBI-GEO ]   OR52B4 [ EBI - ARRAY_EXPRESS ]   OR52B4 [ SEEK ]   OR52B4 [ MEM ]
Gene Expression Viewer (FireBrowse)OR52B4 [ Firebrowse - Broad ]
GenevisibleExpression of OR52B4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)143496
GTEX Portal (Tissue expression)OR52B4
Human Protein AtlasENSG00000221996-OR52B4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGK2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGK2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGK2
Splice isoforms : SwissVarQ8NGK2
PhosPhoSitePlusQ8NGK2
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)7tm_4 (PF13853)   
Domain families : Pfam (NCBI)pfam13853   
Conserved Domain (NCBI)OR52B4
Blocks (Seattle)OR52B4
SuperfamilyQ8NGK2
Human Protein Atlas [tissue]ENSG00000221996-OR52B4 [tissue]
Peptide AtlasQ8NGK2
HPRD15007
IPIIPI00303483   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGK2
IntAct (EBI)Q8NGK2
BioGRIDOR52B4
STRING (EMBL)OR52B4
ZODIACOR52B4
Ontologies - Pathways
QuickGOQ8NGK2
Ontology : AmiGOG protein-coupled receptor activity  olfactory receptor activity  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  cognition  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG protein-coupled receptor activity  olfactory receptor activity  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  cognition  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR52B4
Atlas of Cancer Signalling NetworkOR52B4
Wikipedia pathwaysOR52B4
Orthology - Evolution
OrthoDB143496
GeneTree (enSembl)ENSG00000221996
Phylogenetic Trees/Animal Genes : TreeFamOR52B4
HOGENOMQ8NGK2
Homologs : HomoloGeneOR52B4
Homology/Alignments : Family Browser (UCSC)OR52B4
Gene fusions - Rearrangements
Fusion : QuiverOR52B4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR52B4 [hg38]
dbVarOR52B4
ClinVarOR52B4
MonarchOR52B4
1000_GenomesOR52B4 
Exome Variant ServerOR52B4
GNOMAD BrowserENSG00000221996
Varsome BrowserOR52B4
Genomic Variants (DGV)OR52B4 [DGVbeta]
DECIPHEROR52B4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR52B4 
Mutations
ICGC Data PortalOR52B4 
TCGA Data PortalOR52B4 
Broad Tumor PortalOR52B4
OASIS PortalOR52B4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR52B4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DOR52B4
Mutations and Diseases : HGMDOR52B4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR52B4
DgiDB (Drug Gene Interaction Database)OR52B4
DoCM (Curated mutations)OR52B4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR52B4 (select a term)
intoGenOR52B4
Cancer3DOR52B4(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR52B4
MedgenOR52B4
Genetic Testing Registry OR52B4
NextProtQ8NGK2 [Medical]
GENETestsOR52B4
Target ValidationOR52B4
Huge Navigator OR52B4 [HugePedia]
ClinGenOR52B4
Clinical trials, drugs, therapy
MyCancerGenomeOR52B4
Protein Interactions : CTD
Pharm GKB GenePA32398
Clinical trialOR52B4
Miscellaneous
canSAR (ICR)OR52B4 (select the gene name)
HarmonizomeOR52B4
DataMed IndexOR52B4
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR52B4
EVEXOR52B4
GoPubMedOR52B4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:20:52 CET 2020

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