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OR52B4 (olfactory receptor family 52 subfamily B member 4 (gene/pseudogene))

Identity

Alias_namesolfactory receptor, family 52, subfamily B, member 4 (gene/pseudogene)
Other aliasOR11-3
HGNC (Hugo) OR52B4
LocusID (NCBI) 143496
Atlas_Id 71378
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 4367263 and ends at 4368386 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR52B4   15209
Cards
Entrez_Gene (NCBI)OR52B4  143496  olfactory receptor family 52 subfamily B member 4 (gene/pseudogene)
AliasesOR11-3
GeneCards (Weizmann)OR52B4
Ensembl hg19 (Hinxton)ENSG00000221996 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000221996 [Gene_View]  chr11:4367263-4368386 [Contig_View]  OR52B4 [Vega]
ICGC DataPortalENSG00000221996
TCGA cBioPortalOR52B4
AceView (NCBI)OR52B4
Genatlas (Paris)OR52B4
WikiGenes143496
SOURCE (Princeton)OR52B4
Genetics Home Reference (NIH)OR52B4
Genomic and cartography
GoldenPath hg38 (UCSC)OR52B4  -     chr11:4367263-4368386 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR52B4  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblOR52B4 - 11p15.4 [CytoView hg19]  OR52B4 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIOR52B4 [Mapview hg19]  OR52B4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC140928
RefSeq transcript (Entrez)NM_001005161
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR52B4
Cluster EST : UnigeneHs.447463 [ NCBI ]
CGAP (NCI)Hs.447463
Alternative Splicing GalleryENSG00000221996
Gene ExpressionOR52B4 [ NCBI-GEO ]   OR52B4 [ EBI - ARRAY_EXPRESS ]   OR52B4 [ SEEK ]   OR52B4 [ MEM ]
Gene Expression Viewer (FireBrowse)OR52B4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)143496
GTEX Portal (Tissue expression)OR52B4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGK2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGK2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGK2
Splice isoforms : SwissVarQ8NGK2
PhosPhoSitePlusQ8NGK2
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR52B4
DMDM Disease mutations143496
Blocks (Seattle)OR52B4
SuperfamilyQ8NGK2
Human Protein AtlasENSG00000221996
Peptide AtlasQ8NGK2
HPRD15007
IPIIPI00303483   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGK2
IntAct (EBI)Q8NGK2
FunCoupENSG00000221996
BioGRIDOR52B4
STRING (EMBL)OR52B4
ZODIACOR52B4
Ontologies - Pathways
QuickGOQ8NGK2
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  cognition  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  cognition  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR52B4
Atlas of Cancer Signalling NetworkOR52B4
Wikipedia pathwaysOR52B4
Orthology - Evolution
OrthoDB143496
GeneTree (enSembl)ENSG00000221996
Phylogenetic Trees/Animal Genes : TreeFamOR52B4
HOVERGENQ8NGK2
HOGENOMQ8NGK2
Homologs : HomoloGeneOR52B4
Homology/Alignments : Family Browser (UCSC)OR52B4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR52B4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR52B4
dbVarOR52B4
ClinVarOR52B4
1000_GenomesOR52B4 
Exome Variant ServerOR52B4
ExAC (Exome Aggregation Consortium)OR52B4 (select the gene name)
Genetic variants : HAPMAP143496
Genomic Variants (DGV)OR52B4 [DGVbeta]
DECIPHEROR52B4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR52B4 
Mutations
ICGC Data PortalOR52B4 
TCGA Data PortalOR52B4 
Broad Tumor PortalOR52B4
OASIS PortalOR52B4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR52B4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR52B4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR52B4
DgiDB (Drug Gene Interaction Database)OR52B4
DoCM (Curated mutations)OR52B4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR52B4 (select a term)
intoGenOR52B4
Cancer3DOR52B4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR52B4
Genetic Testing Registry OR52B4
NextProtQ8NGK2 [Medical]
TSGene143496
GENETestsOR52B4
Target ValidationOR52B4
Huge Navigator OR52B4 [HugePedia]
snp3D : Map Gene to Disease143496
BioCentury BCIQOR52B4
ClinGenOR52B4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD143496
Chemical/Pharm GKB GenePA32398
Clinical trialOR52B4
Miscellaneous
canSAR (ICR)OR52B4 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR52B4
EVEXOR52B4
GoPubMedOR52B4
iHOPOR52B4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:33:17 CEST 2017

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