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OR52B6 (olfactory receptor family 52 subfamily B member 6)

Identity

Alias_namesolfactory receptor, family 52, subfamily B, member 6
Other aliasOR11-47
HGNC (Hugo) OR52B6
LocusID (NCBI) 340980
Atlas_Id 71379
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 5580877 and ends at 5581884 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR52B6   15211
Cards
Entrez_Gene (NCBI)OR52B6  340980  olfactory receptor family 52 subfamily B member 6
AliasesOR11-47
GeneCards (Weizmann)OR52B6
Ensembl hg19 (Hinxton)ENSG00000187747 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187747 [Gene_View]  chr11:5580877-5581884 [Contig_View]  OR52B6 [Vega]
ICGC DataPortalENSG00000187747
TCGA cBioPortalOR52B6
AceView (NCBI)OR52B6
Genatlas (Paris)OR52B6
WikiGenes340980
SOURCE (Princeton)OR52B6
Genetics Home Reference (NIH)OR52B6
Genomic and cartography
GoldenPath hg38 (UCSC)OR52B6  -     chr11:5580877-5581884 +  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR52B6  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblOR52B6 - 11p15.4 [CytoView hg19]  OR52B6 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIOR52B6 [Mapview hg19]  OR52B6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001005162
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR52B6
Cluster EST : UnigeneHs.553704 [ NCBI ]
CGAP (NCI)Hs.553704
Alternative Splicing GalleryENSG00000187747
Gene ExpressionOR52B6 [ NCBI-GEO ]   OR52B6 [ EBI - ARRAY_EXPRESS ]   OR52B6 [ SEEK ]   OR52B6 [ MEM ]
Gene Expression Viewer (FireBrowse)OR52B6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)340980
GTEX Portal (Tissue expression)OR52B6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGF0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGF0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGF0
Splice isoforms : SwissVarQ8NGF0
PhosPhoSitePlusQ8NGF0
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR52B6
DMDM Disease mutations340980
Blocks (Seattle)OR52B6
SuperfamilyQ8NGF0
Human Protein AtlasENSG00000187747
Peptide AtlasQ8NGF0
HPRD17743
IPIIPI00303388   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGF0
IntAct (EBI)Q8NGF0
FunCoupENSG00000187747
BioGRIDOR52B6
STRING (EMBL)OR52B6
ZODIACOR52B6
Ontologies - Pathways
QuickGOQ8NGF0
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR52B6
Atlas of Cancer Signalling NetworkOR52B6
Wikipedia pathwaysOR52B6
Orthology - Evolution
OrthoDB340980
GeneTree (enSembl)ENSG00000187747
Phylogenetic Trees/Animal Genes : TreeFamOR52B6
HOVERGENQ8NGF0
HOGENOMQ8NGF0
Homologs : HomoloGeneOR52B6
Homology/Alignments : Family Browser (UCSC)OR52B6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR52B6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR52B6
dbVarOR52B6
ClinVarOR52B6
1000_GenomesOR52B6 
Exome Variant ServerOR52B6
ExAC (Exome Aggregation Consortium)OR52B6 (select the gene name)
Genetic variants : HAPMAP340980
Genomic Variants (DGV)OR52B6 [DGVbeta]
DECIPHEROR52B6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR52B6 
Mutations
ICGC Data PortalOR52B6 
TCGA Data PortalOR52B6 
Broad Tumor PortalOR52B6
OASIS PortalOR52B6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR52B6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR52B6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR52B6
DgiDB (Drug Gene Interaction Database)OR52B6
DoCM (Curated mutations)OR52B6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR52B6 (select a term)
intoGenOR52B6
Cancer3DOR52B6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR52B6
Genetic Testing Registry OR52B6
NextProtQ8NGF0 [Medical]
TSGene340980
GENETestsOR52B6
Target ValidationOR52B6
Huge Navigator OR52B6 [HugePedia]
snp3D : Map Gene to Disease340980
BioCentury BCIQOR52B6
ClinGenOR52B6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD340980
Chemical/Pharm GKB GenePA32400
Clinical trialOR52B6
Miscellaneous
canSAR (ICR)OR52B6 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR52B6
EVEXOR52B6
GoPubMedOR52B6
iHOPOR52B6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:34:33 CEST 2017

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