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OR52D1 (olfactory receptor family 52 subfamily D member 1)

Identity

Alias_namesolfactory receptor, family 52, subfamily D, member 1
Other aliasOR11-43
HGNC (Hugo) OR52D1
LocusID (NCBI) 390066
Atlas_Id 71380
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 5488685 and ends at 5489748 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR52D1   15212
Cards
Entrez_Gene (NCBI)OR52D1  390066  olfactory receptor family 52 subfamily D member 1
AliasesOR11-43
GeneCards (Weizmann)OR52D1
Ensembl hg19 (Hinxton)ENSG00000181609 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181609 [Gene_View]  chr11:5488685-5489748 [Contig_View]  OR52D1 [Vega]
ICGC DataPortalENSG00000181609
TCGA cBioPortalOR52D1
AceView (NCBI)OR52D1
Genatlas (Paris)OR52D1
WikiGenes390066
SOURCE (Princeton)OR52D1
Genetics Home Reference (NIH)OR52D1
Genomic and cartography
GoldenPath hg38 (UCSC)OR52D1  -     chr11:5488685-5489748 +  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR52D1  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblOR52D1 - 11p15.4 [CytoView hg19]  OR52D1 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIOR52D1 [Mapview hg19]  OR52D1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136928 BC136930
RefSeq transcript (Entrez)NM_001005163
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR52D1
Cluster EST : UnigeneHs.553734 [ NCBI ]
CGAP (NCI)Hs.553734
Alternative Splicing GalleryENSG00000181609
Gene ExpressionOR52D1 [ NCBI-GEO ]   OR52D1 [ EBI - ARRAY_EXPRESS ]   OR52D1 [ SEEK ]   OR52D1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR52D1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390066
GTEX Portal (Tissue expression)OR52D1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H346   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H346  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H346
Splice isoforms : SwissVarQ9H346
PhosPhoSitePlusQ9H346
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR52D1
DMDM Disease mutations390066
Blocks (Seattle)OR52D1
SuperfamilyQ9H346
Human Protein AtlasENSG00000181609
Peptide AtlasQ9H346
HPRD15008
IPIIPI00385892   
Protein Interaction databases
DIP (DOE-UCLA)Q9H346
IntAct (EBI)Q9H346
FunCoupENSG00000181609
BioGRIDOR52D1
STRING (EMBL)OR52D1
ZODIACOR52D1
Ontologies - Pathways
QuickGOQ9H346
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR52D1
Atlas of Cancer Signalling NetworkOR52D1
Wikipedia pathwaysOR52D1
Orthology - Evolution
OrthoDB390066
GeneTree (enSembl)ENSG00000181609
Phylogenetic Trees/Animal Genes : TreeFamOR52D1
HOVERGENQ9H346
HOGENOMQ9H346
Homologs : HomoloGeneOR52D1
Homology/Alignments : Family Browser (UCSC)OR52D1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR52D1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR52D1
dbVarOR52D1
ClinVarOR52D1
1000_GenomesOR52D1 
Exome Variant ServerOR52D1
ExAC (Exome Aggregation Consortium)OR52D1 (select the gene name)
Genetic variants : HAPMAP390066
Genomic Variants (DGV)OR52D1 [DGVbeta]
DECIPHEROR52D1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR52D1 
Mutations
ICGC Data PortalOR52D1 
TCGA Data PortalOR52D1 
Broad Tumor PortalOR52D1
OASIS PortalOR52D1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR52D1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR52D1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR52D1
DgiDB (Drug Gene Interaction Database)OR52D1
DoCM (Curated mutations)OR52D1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR52D1 (select a term)
intoGenOR52D1
Cancer3DOR52D1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR52D1
Genetic Testing Registry OR52D1
NextProtQ9H346 [Medical]
TSGene390066
GENETestsOR52D1
Target ValidationOR52D1
Huge Navigator OR52D1 [HugePedia]
snp3D : Map Gene to Disease390066
BioCentury BCIQOR52D1
ClinGenOR52D1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390066
Chemical/Pharm GKB GenePA32401
Clinical trialOR52D1
Miscellaneous
canSAR (ICR)OR52D1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR52D1
EVEXOR52D1
GoPubMedOR52D1
iHOPOR52D1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:33:18 CEST 2017

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