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OR52E1 (olfactory receptor family 52 subfamily E member 1 (gene/pseudogene))

Identity

Alias (NCBI)OR52E1P
HGNC (Hugo) OR52E1
HGNC Previous nameOR52E1P
HGNC Previous nameolfactory receptor, family 52, subfamily E, member 1 pseudogene
 olfactory receptor, family 52, subfamily E, member 1 gene/pseudogene
 olfactory receptor, family 52, subfamily E, member 1 (gene/pseudogene)
LocusID (NCBI) 79296
Atlas_Id 78877
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 5069372 and ends at 5070696 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)OR52E1   14766
Cards
Entrez_Gene (NCBI)OR52E1    olfactory receptor family 52 subfamily E member 1 (gene/pseudogene)
AliasesOR52E1P
GeneCards (Weizmann)OR52E1
Ensembl hg19 (Hinxton)ENSG00000273085 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000273085 [Gene_View]  ENSG00000273085 [Sequence]  chr11:5069372-5070696 [Contig_View]  OR52E1 [Vega]
ICGC DataPortalENSG00000273085
TCGA cBioPortalOR52E1
AceView (NCBI)OR52E1
Genatlas (Paris)OR52E1
SOURCE (Princeton)OR52E1
Genetics Home Reference (NIH)OR52E1
Genomic and cartography
GoldenPath hg38 (UCSC)OR52E1  -     chr11:5069372-5070696 +  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR52E1  -     11p15.4   [Description]    (hg19-Feb_2009)
GoldenPathOR52E1 - 11p15.4 [CytoView hg19]  OR52E1 - 11p15.4 [CytoView hg38]
ImmunoBaseENSG00000273085
genome Data Viewer NCBIOR52E1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001348221
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR52E1
Alternative Splicing GalleryENSG00000273085
Gene ExpressionOR52E1 [ NCBI-GEO ]   OR52E1 [ EBI - ARRAY_EXPRESS ]   OR52E1 [ SEEK ]   OR52E1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR52E1 [ Firebrowse - Broad ]
GenevisibleExpression of OR52E1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79296
GTEX Portal (Tissue expression)OR52E1
Human Protein AtlasENSG00000273085-OR52E1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGJ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGJ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGJ3
Splice isoforms : SwissVarQ8NGJ3
PhosPhoSitePlusQ8NGJ3
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)7tm_4 (PF13853)   
Domain families : Pfam (NCBI)pfam13853   
Conserved Domain (NCBI)OR52E1
Blocks (Seattle)OR52E1
SuperfamilyQ8NGJ3
Human Protein Atlas [tissue]ENSG00000273085-OR52E1 [tissue]
Peptide AtlasQ8NGJ3
IPIIPI00303464   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGJ3
IntAct (EBI)Q8NGJ3
BioGRIDOR52E1
STRING (EMBL)OR52E1
ZODIACOR52E1
Ontologies - Pathways
QuickGOQ8NGJ3
Ontology : AmiGOG protein-coupled receptor activity  olfactory receptor activity  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG protein-coupled receptor activity  olfactory receptor activity  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR52E1
Atlas of Cancer Signalling NetworkOR52E1
Wikipedia pathwaysOR52E1
Orthology - Evolution
OrthoDB79296
GeneTree (enSembl)ENSG00000273085
Phylogenetic Trees/Animal Genes : TreeFamOR52E1
HOGENOMQ8NGJ3
Homologs : HomoloGeneOR52E1
Homology/Alignments : Family Browser (UCSC)OR52E1
Gene fusions - Rearrangements
Fusion : QuiverOR52E1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR52E1 [hg38]
dbVarOR52E1
ClinVarOR52E1
MonarchOR52E1
1000_GenomesOR52E1 
Exome Variant ServerOR52E1
GNOMAD BrowserENSG00000273085
Varsome BrowserOR52E1
Genomic Variants (DGV)OR52E1 [DGVbeta]
DECIPHEROR52E1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR52E1 
Mutations
ICGC Data PortalOR52E1 
TCGA Data PortalOR52E1 
Broad Tumor PortalOR52E1
OASIS PortalOR52E1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDOR52E1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR52E1
DgiDB (Drug Gene Interaction Database)OR52E1
DoCM (Curated mutations)OR52E1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR52E1 (select a term)
intoGenOR52E1
Cancer3DOR52E1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR52E1
MedgenOR52E1
Genetic Testing Registry OR52E1
NextProtQ8NGJ3 [Medical]
GENETestsOR52E1
Target ValidationOR52E1
Huge Navigator OR52E1 [HugePedia]
ClinGenOR52E1
Clinical trials, drugs, therapy
MyCancerGenomeOR52E1
Protein Interactions : CTD
Pharm GKB GenePA32402
Clinical trialOR52E1
Miscellaneous
canSAR (ICR)OR52E1 (select the gene name)
HarmonizomeOR52E1
DataMed IndexOR52E1
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR52E1
EVEXOR52E1
GoPubMedOR52E1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:20:53 CET 2020
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