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OR52E1 (olfactory receptor family 52 subfamily E member 1 (gene/pseudogene))

Identity

Alias_namesOR52E1P
olfactory receptor, family 52, subfamily E, member 1 pseudogene
olfactory receptor, family 52, subfamily E, member 1 gene/pseudogene
olfactory receptor, family 52, subfamily E, member 1 (gene/pseudogene)
Other alias
HGNC (Hugo) OR52E1
LocusID (NCBI) 79296
Atlas_Id 78877
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 5069372 and ends at 5070696 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)OR52E1   14766
Cards
Entrez_Gene (NCBI)OR52E1  79296  olfactory receptor family 52 subfamily E member 1 (gene/pseudogene)
AliasesOR52E1P
GeneCards (Weizmann)OR52E1
Ensembl hg19 (Hinxton)ENSG00000236621 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000236621 [Gene_View]  ENSG00000236621 [Sequence]  chr11:5069372-5070696 [Contig_View]  OR52E1 [Vega]
ICGC DataPortalENSG00000236621
TCGA cBioPortalOR52E1
AceView (NCBI)OR52E1
Genatlas (Paris)OR52E1
WikiGenes79296
SOURCE (Princeton)OR52E1
Genetics Home Reference (NIH)OR52E1
Genomic and cartography
GoldenPath hg38 (UCSC)OR52E1  -     chr11:5069372-5070696 +  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR52E1  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblOR52E1 - 11p15.4 [CytoView hg19]  OR52E1 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIOR52E1 [Mapview hg19]  OR52E1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001348221
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR52E1
Alternative Splicing GalleryENSG00000236621
Gene ExpressionOR52E1 [ NCBI-GEO ]   OR52E1 [ EBI - ARRAY_EXPRESS ]   OR52E1 [ SEEK ]   OR52E1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR52E1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79296
GTEX Portal (Tissue expression)OR52E1
Human Protein AtlasENSG00000236621-OR52E1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGJ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGJ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGJ3
Splice isoforms : SwissVarQ8NGJ3
PhosPhoSitePlusQ8NGJ3
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR52E1
DMDM Disease mutations79296
Blocks (Seattle)OR52E1
SuperfamilyQ8NGJ3
Human Protein Atlas [tissue]ENSG00000236621-OR52E1 [tissue]
Peptide AtlasQ8NGJ3
IPIIPI00303464   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGJ3
IntAct (EBI)Q8NGJ3
FunCoupENSG00000236621
BioGRIDOR52E1
STRING (EMBL)OR52E1
ZODIACOR52E1
Ontologies - Pathways
QuickGOQ8NGJ3
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR52E1
Atlas of Cancer Signalling NetworkOR52E1
Wikipedia pathwaysOR52E1
Orthology - Evolution
OrthoDB79296
GeneTree (enSembl)ENSG00000236621
Phylogenetic Trees/Animal Genes : TreeFamOR52E1
HOVERGENQ8NGJ3
HOGENOMQ8NGJ3
Homologs : HomoloGeneOR52E1
Homology/Alignments : Family Browser (UCSC)OR52E1
Gene fusions - Rearrangements
Fusion : QuiverOR52E1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR52E1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR52E1
dbVarOR52E1
ClinVarOR52E1
1000_GenomesOR52E1 
Exome Variant ServerOR52E1
ExAC (Exome Aggregation Consortium)ENSG00000236621
GNOMAD BrowserENSG00000236621
Varsome BrowserOR52E1
Genetic variants : HAPMAP79296
Genomic Variants (DGV)OR52E1 [DGVbeta]
DECIPHEROR52E1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR52E1 
Mutations
ICGC Data PortalOR52E1 
TCGA Data PortalOR52E1 
Broad Tumor PortalOR52E1
OASIS PortalOR52E1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDOR52E1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR52E1
DgiDB (Drug Gene Interaction Database)OR52E1
DoCM (Curated mutations)OR52E1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR52E1 (select a term)
intoGenOR52E1
Cancer3DOR52E1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR52E1
MedgenOR52E1
Genetic Testing Registry OR52E1
NextProtQ8NGJ3 [Medical]
TSGene79296
GENETestsOR52E1
Target ValidationOR52E1
Huge Navigator OR52E1 [HugePedia]
snp3D : Map Gene to Disease79296
BioCentury BCIQOR52E1
ClinGenOR52E1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79296
Chemical/Pharm GKB GenePA32402
Clinical trialOR52E1
Miscellaneous
canSAR (ICR)OR52E1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR52E1
EVEXOR52E1
GoPubMedOR52E1
iHOPOR52E1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:21:59 CEST 2018
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