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OR52E2 (olfactory receptor family 52 subfamily E member 2)

Identity

Alias_namesolfactory receptor, family 52, subfamily E, member 2
Other alias-
HGNC (Hugo) OR52E2
LocusID (NCBI) 119678
Atlas_Id 71381
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 5058650 and ends at 5059627 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR52E2   14769
Cards
Entrez_Gene (NCBI)OR52E2  119678  olfactory receptor family 52 subfamily E member 2
Aliases
GeneCards (Weizmann)OR52E2
Ensembl hg19 (Hinxton)ENSG00000176787 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176787 [Gene_View]  chr11:5058650-5059627 [Contig_View]  OR52E2 [Vega]
ICGC DataPortalENSG00000176787
TCGA cBioPortalOR52E2
AceView (NCBI)OR52E2
Genatlas (Paris)OR52E2
WikiGenes119678
SOURCE (Princeton)OR52E2
Genetics Home Reference (NIH)OR52E2
Genomic and cartography
GoldenPath hg38 (UCSC)OR52E2  -     chr11:5058650-5059627 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR52E2  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblOR52E2 - 11p15.4 [CytoView hg19]  OR52E2 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIOR52E2 [Mapview hg19]  OR52E2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001005164
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR52E2
Cluster EST : UnigeneHs.553557 [ NCBI ]
CGAP (NCI)Hs.553557
Alternative Splicing GalleryENSG00000176787
Gene ExpressionOR52E2 [ NCBI-GEO ]   OR52E2 [ EBI - ARRAY_EXPRESS ]   OR52E2 [ SEEK ]   OR52E2 [ MEM ]
Gene Expression Viewer (FireBrowse)OR52E2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)119678
GTEX Portal (Tissue expression)OR52E2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGJ4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGJ4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGJ4
Splice isoforms : SwissVarQ8NGJ4
PhosPhoSitePlusQ8NGJ4
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR52E2
DMDM Disease mutations119678
Blocks (Seattle)OR52E2
SuperfamilyQ8NGJ4
Human Protein AtlasENSG00000176787
Peptide AtlasQ8NGJ4
HPRD15009
IPIIPI00303465   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGJ4
IntAct (EBI)Q8NGJ4
FunCoupENSG00000176787
BioGRIDOR52E2
STRING (EMBL)OR52E2
ZODIACOR52E2
Ontologies - Pathways
QuickGOQ8NGJ4
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR52E2
Atlas of Cancer Signalling NetworkOR52E2
Wikipedia pathwaysOR52E2
Orthology - Evolution
OrthoDB119678
GeneTree (enSembl)ENSG00000176787
Phylogenetic Trees/Animal Genes : TreeFamOR52E2
HOVERGENQ8NGJ4
HOGENOMQ8NGJ4
Homologs : HomoloGeneOR52E2
Homology/Alignments : Family Browser (UCSC)OR52E2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR52E2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR52E2
dbVarOR52E2
ClinVarOR52E2
1000_GenomesOR52E2 
Exome Variant ServerOR52E2
ExAC (Exome Aggregation Consortium)OR52E2 (select the gene name)
Genetic variants : HAPMAP119678
Genomic Variants (DGV)OR52E2 [DGVbeta]
DECIPHEROR52E2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR52E2 
Mutations
ICGC Data PortalOR52E2 
TCGA Data PortalOR52E2 
Broad Tumor PortalOR52E2
OASIS PortalOR52E2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR52E2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR52E2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR52E2
DgiDB (Drug Gene Interaction Database)OR52E2
DoCM (Curated mutations)OR52E2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR52E2 (select a term)
intoGenOR52E2
Cancer3DOR52E2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR52E2
Genetic Testing Registry OR52E2
NextProtQ8NGJ4 [Medical]
TSGene119678
GENETestsOR52E2
Target ValidationOR52E2
Huge Navigator OR52E2 [HugePedia]
snp3D : Map Gene to Disease119678
BioCentury BCIQOR52E2
ClinGenOR52E2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD119678
Chemical/Pharm GKB GenePA32403
Clinical trialOR52E2
Miscellaneous
canSAR (ICR)OR52E2 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR52E2
EVEXOR52E2
GoPubMedOR52E2
iHOPOR52E2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:34:33 CEST 2017

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