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OR52E4 (olfactory receptor family 52 subfamily E member 4)

Identity

Alias_namesolfactory receptor, family 52, subfamily E, member 4
Other aliasOR11-55
HGNC (Hugo) OR52E4
LocusID (NCBI) 390081
Atlas_Id 71382
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 5884293 and ends at 5885231 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR52E4   15213
Cards
Entrez_Gene (NCBI)OR52E4  390081  olfactory receptor family 52 subfamily E member 4
AliasesOR11-55
GeneCards (Weizmann)OR52E4
Ensembl hg19 (Hinxton)ENSG00000180974 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180974 [Gene_View]  chr11:5884293-5885231 [Contig_View]  OR52E4 [Vega]
ICGC DataPortalENSG00000180974
TCGA cBioPortalOR52E4
AceView (NCBI)OR52E4
Genatlas (Paris)OR52E4
WikiGenes390081
SOURCE (Princeton)OR52E4
Genetics Home Reference (NIH)OR52E4
Genomic and cartography
GoldenPath hg38 (UCSC)OR52E4  -     chr11:5884293-5885231 +  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR52E4  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblOR52E4 - 11p15.4 [CytoView hg19]  OR52E4 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIOR52E4 [Mapview hg19]  OR52E4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136972 BC136974
RefSeq transcript (Entrez)NM_001005165
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR52E4
Cluster EST : UnigeneHs.553739 [ NCBI ]
CGAP (NCI)Hs.553739
Alternative Splicing GalleryENSG00000180974
Gene ExpressionOR52E4 [ NCBI-GEO ]   OR52E4 [ EBI - ARRAY_EXPRESS ]   OR52E4 [ SEEK ]   OR52E4 [ MEM ]
Gene Expression Viewer (FireBrowse)OR52E4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390081
GTEX Portal (Tissue expression)OR52E4
Human Protein AtlasENSG00000180974-OR52E4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGH9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGH9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGH9
Splice isoforms : SwissVarQ8NGH9
PhosPhoSitePlusQ8NGH9
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR52E4
DMDM Disease mutations390081
Blocks (Seattle)OR52E4
SuperfamilyQ8NGH9
Human Protein Atlas [tissue]ENSG00000180974-OR52E4 [tissue]
Peptide AtlasQ8NGH9
HPRD15010
IPIIPI00169021   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGH9
IntAct (EBI)Q8NGH9
FunCoupENSG00000180974
BioGRIDOR52E4
STRING (EMBL)OR52E4
ZODIACOR52E4
Ontologies - Pathways
QuickGOQ8NGH9
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR52E4
Atlas of Cancer Signalling NetworkOR52E4
Wikipedia pathwaysOR52E4
Orthology - Evolution
OrthoDB390081
GeneTree (enSembl)ENSG00000180974
Phylogenetic Trees/Animal Genes : TreeFamOR52E4
HOVERGENQ8NGH9
HOGENOMQ8NGH9
Homologs : HomoloGeneOR52E4
Homology/Alignments : Family Browser (UCSC)OR52E4
Gene fusions - Rearrangements
Fusion: Tumor Portal OR52E4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR52E4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR52E4
dbVarOR52E4
ClinVarOR52E4
1000_GenomesOR52E4 
Exome Variant ServerOR52E4
ExAC (Exome Aggregation Consortium)ENSG00000180974
GNOMAD BrowserENSG00000180974
Genetic variants : HAPMAP390081
Genomic Variants (DGV)OR52E4 [DGVbeta]
DECIPHEROR52E4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR52E4 
Mutations
ICGC Data PortalOR52E4 
TCGA Data PortalOR52E4 
Broad Tumor PortalOR52E4
OASIS PortalOR52E4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR52E4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR52E4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR52E4
DgiDB (Drug Gene Interaction Database)OR52E4
DoCM (Curated mutations)OR52E4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR52E4 (select a term)
intoGenOR52E4
Cancer3DOR52E4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR52E4
Genetic Testing Registry OR52E4
NextProtQ8NGH9 [Medical]
TSGene390081
GENETestsOR52E4
Target ValidationOR52E4
Huge Navigator OR52E4 [HugePedia]
snp3D : Map Gene to Disease390081
BioCentury BCIQOR52E4
ClinGenOR52E4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390081
Chemical/Pharm GKB GenePA32405
Clinical trialOR52E4
Miscellaneous
canSAR (ICR)OR52E4 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR52E4
EVEXOR52E4
GoPubMedOR52E4
iHOPOR52E4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:20:48 CET 2017

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