Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OR52E5 (olfactory receptor family 52 subfamily E member 5)

Identity

Alias (NCBI)OR11-56
HGNC (Hugo) OR52E5
LocusID (NCBI) 390082
Atlas_Id 80377
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 5900765 and ends at 5901760 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

Nomenclature
HGNC (Hugo)OR52E5   15214
Cards
Entrez_Gene (NCBI)OR52E5    olfactory receptor family 52 subfamily E member 5
AliasesOR11-56
GeneCards (Weizmann)OR52E5
Ensembl hg19 (Hinxton)ENSG00000277932 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000277932 [Gene_View]  ENSG00000277932 [Sequence]  chr11:5900765-5901760 [Contig_View]  OR52E5 [Vega]
ICGC DataPortalENSG00000277932
TCGA cBioPortalOR52E5
AceView (NCBI)OR52E5
Genatlas (Paris)OR52E5
SOURCE (Princeton)OR52E5
Genetics Home Reference (NIH)OR52E5
Genomic and cartography
GoldenPath hg38 (UCSC)OR52E5  -     chr11:5900765-5901760 +  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR52E5  -     11p15.4   [Description]    (hg19-Feb_2009)
GoldenPathOR52E5 - 11p15.4 [CytoView hg19]  OR52E5 - 11p15.4 [CytoView hg38]
ImmunoBaseENSG00000277932
genome Data Viewer NCBIOR52E5 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001005166
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR52E5
Alternative Splicing GalleryENSG00000277932
Gene ExpressionOR52E5 [ NCBI-GEO ]   OR52E5 [ EBI - ARRAY_EXPRESS ]   OR52E5 [ SEEK ]   OR52E5 [ MEM ]
Gene Expression Viewer (FireBrowse)OR52E5 [ Firebrowse - Broad ]
GenevisibleExpression of OR52E5 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390082
GTEX Portal (Tissue expression)OR52E5
Human Protein AtlasENSG00000277932-OR52E5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NH55   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NH55  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NH55
Splice isoforms : SwissVarQ8NH55
PhosPhoSitePlusQ8NH55
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)7tm_4 (PF13853)   
Domain families : Pfam (NCBI)pfam13853   
Conserved Domain (NCBI)OR52E5
Blocks (Seattle)OR52E5
SuperfamilyQ8NH55
Human Protein Atlas [tissue]ENSG00000277932-OR52E5 [tissue]
Peptide AtlasQ8NH55
IPIIPI00169158   
Protein Interaction databases
DIP (DOE-UCLA)Q8NH55
IntAct (EBI)Q8NH55
BioGRIDOR52E5
STRING (EMBL)OR52E5
ZODIACOR52E5
Ontologies - Pathways
QuickGOQ8NH55
Ontology : AmiGOG protein-coupled receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG protein-coupled receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR52E5
Atlas of Cancer Signalling NetworkOR52E5
Wikipedia pathwaysOR52E5
Orthology - Evolution
OrthoDB390082
GeneTree (enSembl)ENSG00000277932
Phylogenetic Trees/Animal Genes : TreeFamOR52E5
HOGENOMQ8NH55
Homologs : HomoloGeneOR52E5
Homology/Alignments : Family Browser (UCSC)OR52E5
Gene fusions - Rearrangements
Fusion : QuiverOR52E5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR52E5 [hg38]
dbVarOR52E5
ClinVarOR52E5
MonarchOR52E5
1000_GenomesOR52E5 
Exome Variant ServerOR52E5
GNOMAD BrowserENSG00000277932
Varsome BrowserOR52E5
Genomic Variants (DGV)OR52E5 [DGVbeta]
DECIPHEROR52E5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR52E5 
Mutations
ICGC Data PortalOR52E5 
TCGA Data PortalOR52E5 
Broad Tumor PortalOR52E5
OASIS PortalOR52E5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR52E5  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DOR52E5
Mutations and Diseases : HGMDOR52E5
BioMutasearch OR52E5
DgiDB (Drug Gene Interaction Database)OR52E5
DoCM (Curated mutations)OR52E5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR52E5 (select a term)
intoGenOR52E5
Cancer3DOR52E5(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR52E5
MedgenOR52E5
Genetic Testing Registry OR52E5
NextProtQ8NH55 [Medical]
GENETestsOR52E5
Target ValidationOR52E5
Huge Navigator OR52E5 [HugePedia]
ClinGenOR52E5
Clinical trials, drugs, therapy
MyCancerGenomeOR52E5
Protein Interactions : CTD
Pharm GKB GenePA32406
Clinical trialOR52E5
Miscellaneous
canSAR (ICR)OR52E5 (select the gene name)
HarmonizomeOR52E5
DataMed IndexOR52E5
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR52E5
EVEXOR52E5
GoPubMedOR52E5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 5 17:20:54 CET 2020

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.