Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OR52E6 (olfactory receptor family 52 subfamily E member 6)

Identity

Alias_namesolfactory receptor, family 52, subfamily E, member 6
Other aliasOR11-58
HGNC (Hugo) OR52E6
LocusID (NCBI) 390078
Atlas_Id 71383
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 5840956 and ends at 5841897 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR52E6   15215
Cards
Entrez_Gene (NCBI)OR52E6  390078  olfactory receptor family 52 subfamily E member 6
AliasesOR11-58
GeneCards (Weizmann)OR52E6
Ensembl hg19 (Hinxton)ENSG00000205409 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205409 [Gene_View]  chr11:5840956-5841897 [Contig_View]  OR52E6 [Vega]
ICGC DataPortalENSG00000205409
TCGA cBioPortalOR52E6
AceView (NCBI)OR52E6
Genatlas (Paris)OR52E6
WikiGenes390078
SOURCE (Princeton)OR52E6
Genetics Home Reference (NIH)OR52E6
Genomic and cartography
GoldenPath hg38 (UCSC)OR52E6  -     chr11:5840956-5841897 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR52E6  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblOR52E6 - 11p15.4 [CytoView hg19]  OR52E6 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIOR52E6 [Mapview hg19]  OR52E6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001005167
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR52E6
Cluster EST : UnigeneHs.534693 [ NCBI ]
CGAP (NCI)Hs.534693
Alternative Splicing GalleryENSG00000205409
Gene ExpressionOR52E6 [ NCBI-GEO ]   OR52E6 [ EBI - ARRAY_EXPRESS ]   OR52E6 [ SEEK ]   OR52E6 [ MEM ]
Gene Expression Viewer (FireBrowse)OR52E6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390078
GTEX Portal (Tissue expression)OR52E6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96RD3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96RD3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96RD3
Splice isoforms : SwissVarQ96RD3
PhosPhoSitePlusQ96RD3
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR52E6
DMDM Disease mutations390078
Blocks (Seattle)OR52E6
SuperfamilyQ96RD3
Human Protein AtlasENSG00000205409
Peptide AtlasQ96RD3
HPRD15012
IPIIPI00141011   
Protein Interaction databases
DIP (DOE-UCLA)Q96RD3
IntAct (EBI)Q96RD3
FunCoupENSG00000205409
BioGRIDOR52E6
STRING (EMBL)OR52E6
ZODIACOR52E6
Ontologies - Pathways
QuickGOQ96RD3
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR52E6
Atlas of Cancer Signalling NetworkOR52E6
Wikipedia pathwaysOR52E6
Orthology - Evolution
OrthoDB390078
GeneTree (enSembl)ENSG00000205409
Phylogenetic Trees/Animal Genes : TreeFamOR52E6
HOVERGENQ96RD3
HOGENOMQ96RD3
Homologs : HomoloGeneOR52E6
Homology/Alignments : Family Browser (UCSC)OR52E6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR52E6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR52E6
dbVarOR52E6
ClinVarOR52E6
1000_GenomesOR52E6 
Exome Variant ServerOR52E6
ExAC (Exome Aggregation Consortium)OR52E6 (select the gene name)
Genetic variants : HAPMAP390078
Genomic Variants (DGV)OR52E6 [DGVbeta]
DECIPHEROR52E6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR52E6 
Mutations
ICGC Data PortalOR52E6 
TCGA Data PortalOR52E6 
Broad Tumor PortalOR52E6
OASIS PortalOR52E6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR52E6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR52E6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR52E6
DgiDB (Drug Gene Interaction Database)OR52E6
DoCM (Curated mutations)OR52E6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR52E6 (select a term)
intoGenOR52E6
Cancer3DOR52E6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR52E6
Genetic Testing Registry OR52E6
NextProtQ96RD3 [Medical]
TSGene390078
GENETestsOR52E6
Target ValidationOR52E6
Huge Navigator OR52E6 [HugePedia]
snp3D : Map Gene to Disease390078
BioCentury BCIQOR52E6
ClinGenOR52E6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390078
Chemical/Pharm GKB GenePA32407
Clinical trialOR52E6
Miscellaneous
canSAR (ICR)OR52E6 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR52E6
EVEXOR52E6
GoPubMedOR52E6
iHOPOR52E6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:33:18 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.