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OR52E8 (olfactory receptor family 52 subfamily E member 8)

Identity

Alias_namesolfactory receptor, family 52, subfamily E, member 8 pseudogene
olfactory receptor, family 52, subfamily E, member 8
Other aliasOR11-54
HGNC (Hugo) OR52E8
LocusID (NCBI) 390079
Atlas_Id 71384
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 5856749 and ends at 5857702 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR52E8   15217
Cards
Entrez_Gene (NCBI)OR52E8  390079  olfactory receptor family 52 subfamily E member 8
AliasesOR11-54
GeneCards (Weizmann)OR52E8
Ensembl hg19 (Hinxton)ENSG00000183269 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183269 [Gene_View]  chr11:5856749-5857702 [Contig_View]  OR52E8 [Vega]
ICGC DataPortalENSG00000183269
TCGA cBioPortalOR52E8
AceView (NCBI)OR52E8
Genatlas (Paris)OR52E8
WikiGenes390079
SOURCE (Princeton)OR52E8
Genetics Home Reference (NIH)OR52E8
Genomic and cartography
GoldenPath hg38 (UCSC)OR52E8  -     chr11:5856749-5857702 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR52E8  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblOR52E8 - 11p15.4 [CytoView hg19]  OR52E8 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIOR52E8 [Mapview hg19]  OR52E8 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC137030 BC137041
RefSeq transcript (Entrez)NM_001005168
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR52E8
Cluster EST : UnigeneHs.553738 [ NCBI ]
CGAP (NCI)Hs.553738
Alternative Splicing GalleryENSG00000183269
Gene ExpressionOR52E8 [ NCBI-GEO ]   OR52E8 [ EBI - ARRAY_EXPRESS ]   OR52E8 [ SEEK ]   OR52E8 [ MEM ]
Gene Expression Viewer (FireBrowse)OR52E8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390079
GTEX Portal (Tissue expression)OR52E8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6IFG1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6IFG1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6IFG1
Splice isoforms : SwissVarQ6IFG1
PhosPhoSitePlusQ6IFG1
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR52E8
DMDM Disease mutations390079
Blocks (Seattle)OR52E8
SuperfamilyQ6IFG1
Human Protein AtlasENSG00000183269
Peptide AtlasQ6IFG1
HPRD15013
IPIIPI00419385   
Protein Interaction databases
DIP (DOE-UCLA)Q6IFG1
IntAct (EBI)Q6IFG1
FunCoupENSG00000183269
BioGRIDOR52E8
STRING (EMBL)OR52E8
ZODIACOR52E8
Ontologies - Pathways
QuickGOQ6IFG1
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR52E8
Atlas of Cancer Signalling NetworkOR52E8
Wikipedia pathwaysOR52E8
Orthology - Evolution
OrthoDB390079
GeneTree (enSembl)ENSG00000183269
Phylogenetic Trees/Animal Genes : TreeFamOR52E8
HOVERGENQ6IFG1
HOGENOMQ6IFG1
Homologs : HomoloGeneOR52E8
Homology/Alignments : Family Browser (UCSC)OR52E8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR52E8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR52E8
dbVarOR52E8
ClinVarOR52E8
1000_GenomesOR52E8 
Exome Variant ServerOR52E8
ExAC (Exome Aggregation Consortium)OR52E8 (select the gene name)
Genetic variants : HAPMAP390079
Genomic Variants (DGV)OR52E8 [DGVbeta]
DECIPHEROR52E8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR52E8 
Mutations
ICGC Data PortalOR52E8 
TCGA Data PortalOR52E8 
Broad Tumor PortalOR52E8
OASIS PortalOR52E8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR52E8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR52E8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR52E8
DgiDB (Drug Gene Interaction Database)OR52E8
DoCM (Curated mutations)OR52E8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR52E8 (select a term)
intoGenOR52E8
Cancer3DOR52E8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR52E8
Genetic Testing Registry OR52E8
NextProtQ6IFG1 [Medical]
TSGene390079
GENETestsOR52E8
Target ValidationOR52E8
Huge Navigator OR52E8 [HugePedia]
snp3D : Map Gene to Disease390079
BioCentury BCIQOR52E8
ClinGenOR52E8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390079
Chemical/Pharm GKB GenePA32409
Clinical trialOR52E8
Miscellaneous
canSAR (ICR)OR52E8 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR52E8
EVEXOR52E8
GoPubMedOR52E8
iHOPOR52E8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:34:34 CEST 2017

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