Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OR52H1 (olfactory receptor, family 52, subfamily H, member 1)

Identity

Alias_namesolfactory receptor, family 52, subfamily H, member 1
Other aliasOR11-41
OR11-45
HGNC (Hugo) OR52H1
LocusID (NCBI) 390067
Atlas_Id 71385
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 5565791 and ends at 5566753 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR52H1   15218
Cards
Entrez_Gene (NCBI)OR52H1  390067  olfactory receptor, family 52, subfamily H, member 1
AliasesOR11-41; OR11-45
GeneCards (Weizmann)OR52H1
Ensembl hg19 (Hinxton)ENSG00000181616 [Gene_View]  chr11:5565791-5566753 [Contig_View]  OR52H1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000181616 [Gene_View]  chr11:5565791-5566753 [Contig_View]  OR52H1 [Vega]
ICGC DataPortalENSG00000181616
TCGA cBioPortalOR52H1
AceView (NCBI)OR52H1
Genatlas (Paris)OR52H1
WikiGenes390067
SOURCE (Princeton)OR52H1
Genetics Home Reference (NIH)OR52H1
Genomic and cartography
GoldenPath hg19 (UCSC)OR52H1  -     chr11:5565791-5566753 -  11p15.4   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR52H1  -     11p15.4   [Description]    (hg38-Dec_2013)
EnsemblOR52H1 - 11p15.4 [CytoView hg19]  OR52H1 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIOR52H1 [Mapview hg19]  OR52H1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136998
RefSeq transcript (Entrez)NM_001005289
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)OR52H1
Cluster EST : UnigeneHs.554540 [ NCBI ]
CGAP (NCI)Hs.554540
Alternative Splicing GalleryENSG00000181616
Gene ExpressionOR52H1 [ NCBI-GEO ]   OR52H1 [ EBI - ARRAY_EXPRESS ]   OR52H1 [ SEEK ]   OR52H1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR52H1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390067
GTEX Portal (Tissue expression)OR52H1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGJ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGJ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGJ2
Splice isoforms : SwissVarQ8NGJ2
PhosPhoSitePlusQ8NGJ2
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR52H1
DMDM Disease mutations390067
Blocks (Seattle)OR52H1
SuperfamilyQ8NGJ2
Human Protein AtlasENSG00000181616
Peptide AtlasQ8NGJ2
HPRD15014
IPIIPI00169034   IPI00873715   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGJ2
IntAct (EBI)Q8NGJ2
FunCoupENSG00000181616
BioGRIDOR52H1
STRING (EMBL)OR52H1
ZODIACOR52H1
Ontologies - Pathways
QuickGOQ8NGJ2
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR52H1
Atlas of Cancer Signalling NetworkOR52H1
Wikipedia pathwaysOR52H1
Orthology - Evolution
OrthoDB390067
GeneTree (enSembl)ENSG00000181616
Phylogenetic Trees/Animal Genes : TreeFamOR52H1
HOVERGENQ8NGJ2
HOGENOMQ8NGJ2
Homologs : HomoloGeneOR52H1
Homology/Alignments : Family Browser (UCSC)OR52H1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR52H1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR52H1
dbVarOR52H1
ClinVarOR52H1
1000_GenomesOR52H1 
Exome Variant ServerOR52H1
ExAC (Exome Aggregation Consortium)OR52H1 (select the gene name)
Genetic variants : HAPMAP390067
Genomic Variants (DGV)OR52H1 [DGVbeta]
DECIPHER (Syndromes)11:5565791-5566753  ENSG00000181616
CONAN: Copy Number AnalysisOR52H1 
Mutations
ICGC Data PortalOR52H1 
TCGA Data PortalOR52H1 
Broad Tumor PortalOR52H1
OASIS PortalOR52H1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR52H1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR52H1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR52H1
DgiDB (Drug Gene Interaction Database)OR52H1
DoCM (Curated mutations)OR52H1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR52H1 (select a term)
intoGenOR52H1
Cancer3DOR52H1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR52H1
Genetic Testing Registry OR52H1
NextProtQ8NGJ2 [Medical]
TSGene390067
GENETestsOR52H1
Huge Navigator OR52H1 [HugePedia]
snp3D : Map Gene to Disease390067
BioCentury BCIQOR52H1
ClinGenOR52H1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390067
Chemical/Pharm GKB GenePA32410
Clinical trialOR52H1
Miscellaneous
canSAR (ICR)OR52H1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR52H1
EVEXOR52H1
GoPubMedOR52H1
iHOPOR52H1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:36:50 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.