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OR52I1 (olfactory receptor family 52 subfamily I member 1)

Identity

Alias (NCBI)OR11-13
HGNC (Hugo) OR52I1
HGNC Previous nameolfactory receptor, family 52, subfamily I, member 1
LocusID (NCBI) 390037
Atlas_Id 71386
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 4594039 and ends at 4595013 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)OR52I1   15220
Cards
Entrez_Gene (NCBI)OR52I1    olfactory receptor family 52 subfamily I member 1
AliasesOR11-13
GeneCards (Weizmann)OR52I1
Ensembl hg19 (Hinxton)ENSG00000232268 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000232268 [Gene_View]  ENSG00000232268 [Sequence]  chr11:4594039-4595013 [Contig_View]  OR52I1 [Vega]
ICGC DataPortalENSG00000232268
TCGA cBioPortalOR52I1
AceView (NCBI)OR52I1
Genatlas (Paris)OR52I1
SOURCE (Princeton)OR52I1
Genetics Home Reference (NIH)OR52I1
Genomic and cartography
GoldenPath hg38 (UCSC)OR52I1  -     chr11:4594039-4595013 +  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR52I1  -     11p15.4   [Description]    (hg19-Feb_2009)
GoldenPathOR52I1 - 11p15.4 [CytoView hg19]  OR52I1 - 11p15.4 [CytoView hg38]
ImmunoBaseENSG00000232268
genome Data Viewer NCBIOR52I1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001005169
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR52I1
Alternative Splicing GalleryENSG00000232268
Gene ExpressionOR52I1 [ NCBI-GEO ]   OR52I1 [ EBI - ARRAY_EXPRESS ]   OR52I1 [ SEEK ]   OR52I1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR52I1 [ Firebrowse - Broad ]
GenevisibleExpression of OR52I1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390037
GTEX Portal (Tissue expression)OR52I1
Human Protein AtlasENSG00000232268-OR52I1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGK6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGK6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGK6
Splice isoforms : SwissVarQ8NGK6
PhosPhoSitePlusQ8NGK6
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)7tm_4 (PF13853)   
Domain families : Pfam (NCBI)pfam13853   
Conserved Domain (NCBI)OR52I1
Blocks (Seattle)OR52I1
SuperfamilyQ8NGK6
Human Protein Atlas [tissue]ENSG00000232268-OR52I1 [tissue]
Peptide AtlasQ8NGK6
HPRD15015
IPIIPI00166004   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGK6
IntAct (EBI)Q8NGK6
BioGRIDOR52I1
STRING (EMBL)OR52I1
ZODIACOR52I1
Ontologies - Pathways
QuickGOQ8NGK6
Ontology : AmiGOG protein-coupled receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG protein-coupled receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR52I1
Atlas of Cancer Signalling NetworkOR52I1
Wikipedia pathwaysOR52I1
Orthology - Evolution
OrthoDB390037
GeneTree (enSembl)ENSG00000232268
Phylogenetic Trees/Animal Genes : TreeFamOR52I1
HOGENOMQ8NGK6
Homologs : HomoloGeneOR52I1
Homology/Alignments : Family Browser (UCSC)OR52I1
Gene fusions - Rearrangements
Fusion : QuiverOR52I1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR52I1 [hg38]
dbVarOR52I1
ClinVarOR52I1
MonarchOR52I1
1000_GenomesOR52I1 
Exome Variant ServerOR52I1
GNOMAD BrowserENSG00000232268
Varsome BrowserOR52I1
Genomic Variants (DGV)OR52I1 [DGVbeta]
DECIPHEROR52I1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR52I1 
Mutations
ICGC Data PortalOR52I1 
TCGA Data PortalOR52I1 
Broad Tumor PortalOR52I1
OASIS PortalOR52I1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR52I1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DOR52I1
Mutations and Diseases : HGMDOR52I1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR52I1
DgiDB (Drug Gene Interaction Database)OR52I1
DoCM (Curated mutations)OR52I1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR52I1 (select a term)
intoGenOR52I1
Cancer3DOR52I1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR52I1
MedgenOR52I1
Genetic Testing Registry OR52I1
NextProtQ8NGK6 [Medical]
GENETestsOR52I1
Target ValidationOR52I1
Huge Navigator OR52I1 [HugePedia]
ClinGenOR52I1
Clinical trials, drugs, therapy
MyCancerGenomeOR52I1
Protein Interactions : CTD
Pharm GKB GenePA32412
Clinical trialOR52I1
Miscellaneous
canSAR (ICR)OR52I1 (select the gene name)
HarmonizomeOR52I1
DataMed IndexOR52I1
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR52I1
EVEXOR52I1
GoPubMedOR52I1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:20:55 CET 2020

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