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OR52I1 (olfactory receptor, family 52, subfamily I, member 1)

Identity

Alias_namesolfactory receptor, family 52, subfamily I, member 1
Other aliasOR11-13
HGNC (Hugo) OR52I1
LocusID (NCBI) 390037
Atlas_Id 71386
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 4615269 and ends at 4616243 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR52I1   15220
Cards
Entrez_Gene (NCBI)OR52I1  390037  olfactory receptor, family 52, subfamily I, member 1
AliasesOR11-13
GeneCards (Weizmann)OR52I1
Ensembl hg19 (Hinxton)ENSG00000232268 [Gene_View]  chr11:4615269-4616243 [Contig_View]  OR52I1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000232268 [Gene_View]  chr11:4615269-4616243 [Contig_View]  OR52I1 [Vega]
ICGC DataPortalENSG00000232268
TCGA cBioPortalOR52I1
AceView (NCBI)OR52I1
Genatlas (Paris)OR52I1
WikiGenes390037
SOURCE (Princeton)OR52I1
Genetics Home Reference (NIH)OR52I1
Genomic and cartography
GoldenPath hg19 (UCSC)OR52I1  -     chr11:4615269-4616243 +  11p15.4   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR52I1  -     11p15.4   [Description]    (hg38-Dec_2013)
EnsemblOR52I1 - 11p15.4 [CytoView hg19]  OR52I1 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIOR52I1 [Mapview hg19]  OR52I1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC148540 BC153131
RefSeq transcript (Entrez)NM_001005169
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)OR52I1
Cluster EST : UnigeneHs.553727 [ NCBI ]
CGAP (NCI)Hs.553727
Alternative Splicing GalleryENSG00000232268
Gene ExpressionOR52I1 [ NCBI-GEO ]   OR52I1 [ EBI - ARRAY_EXPRESS ]   OR52I1 [ SEEK ]   OR52I1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR52I1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390037
GTEX Portal (Tissue expression)OR52I1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGK6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGK6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGK6
Splice isoforms : SwissVarQ8NGK6
PhosPhoSitePlusQ8NGK6
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Conserved Domain (NCBI)OR52I1
DMDM Disease mutations390037
Blocks (Seattle)OR52I1
SuperfamilyQ8NGK6
Human Protein AtlasENSG00000232268
Peptide AtlasQ8NGK6
HPRD15015
IPIIPI00166004   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGK6
IntAct (EBI)Q8NGK6
FunCoupENSG00000232268
BioGRIDOR52I1
STRING (EMBL)OR52I1
ZODIACOR52I1
Ontologies - Pathways
QuickGOQ8NGK6
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR52I1
Atlas of Cancer Signalling NetworkOR52I1
Wikipedia pathwaysOR52I1
Orthology - Evolution
OrthoDB390037
GeneTree (enSembl)ENSG00000232268
Phylogenetic Trees/Animal Genes : TreeFamOR52I1
HOVERGENQ8NGK6
HOGENOMQ8NGK6
Homologs : HomoloGeneOR52I1
Homology/Alignments : Family Browser (UCSC)OR52I1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR52I1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR52I1
dbVarOR52I1
ClinVarOR52I1
1000_GenomesOR52I1 
Exome Variant ServerOR52I1
ExAC (Exome Aggregation Consortium)OR52I1 (select the gene name)
Genetic variants : HAPMAP390037
Genomic Variants (DGV)OR52I1 [DGVbeta]
DECIPHER (Syndromes)11:4615269-4616243  ENSG00000232268
CONAN: Copy Number AnalysisOR52I1 
Mutations
ICGC Data PortalOR52I1 
TCGA Data PortalOR52I1 
Broad Tumor PortalOR52I1
OASIS PortalOR52I1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR52I1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR52I1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR52I1
DgiDB (Drug Gene Interaction Database)OR52I1
DoCM (Curated mutations)OR52I1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR52I1 (select a term)
intoGenOR52I1
Cancer3DOR52I1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR52I1
Genetic Testing Registry OR52I1
NextProtQ8NGK6 [Medical]
TSGene390037
GENETestsOR52I1
Huge Navigator OR52I1 [HugePedia]
snp3D : Map Gene to Disease390037
BioCentury BCIQOR52I1
ClinGenOR52I1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390037
Chemical/Pharm GKB GenePA32412
Clinical trialOR52I1
Miscellaneous
canSAR (ICR)OR52I1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR52I1
EVEXOR52I1
GoPubMedOR52I1
iHOPOR52I1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:36:50 CET 2017

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