Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OR52I2 (olfactory receptor family 52 subfamily I member 2)

Identity

Alias_namesolfactory receptor, family 52, subfamily I, member 2
Other aliasOR11-12
OR52I1
HGNC (Hugo) OR52I2
LocusID (NCBI) 143502
Atlas_Id 71387
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 4586791 and ends at 4587905 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Cards
Nomenclature
HGNC (Hugo)OR52I2   15221
Entrez_Gene (NCBI)OR52I2  143502  olfactory receptor family 52 subfamily I member 2
AliasesOR11-12; OR52I1
GeneCards (Weizmann)OR52I2
Ensembl hg19 (Hinxton)ENSG00000226288 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000226288 [Gene_View]  chr11:4586791-4587905 [Contig_View]  OR52I2 [Vega]
ICGC DataPortalENSG00000226288
TCGA cBioPortalOR52I2
AceView (NCBI)OR52I2
Genatlas (Paris)OR52I2
WikiGenes143502
SOURCE (Princeton)OR52I2
Genetics Home Reference (NIH)OR52I2
Genomic and cartography
GoldenPath hg38 (UCSC)OR52I2  -     chr11:4586791-4587905 +  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR52I2  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblOR52I2 - 11p15.4 [CytoView hg19]  OR52I2 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIOR52I2 [Mapview hg19]  OR52I2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136921 BC151144
RefSeq transcript (Entrez)NM_001005170
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR52I2
Cluster EST : UnigeneHs.553607 [ NCBI ]
CGAP (NCI)Hs.553607
Alternative Splicing GalleryENSG00000226288
Gene ExpressionOR52I2 [ NCBI-GEO ]   OR52I2 [ EBI - ARRAY_EXPRESS ]   OR52I2 [ SEEK ]   OR52I2 [ MEM ]
Gene Expression Viewer (FireBrowse)OR52I2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)143502
GTEX Portal (Tissue expression)OR52I2
Human Protein AtlasENSG00000226288-OR52I2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NH67   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NH67  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NH67
Splice isoforms : SwissVarQ8NH67
PhosPhoSitePlusQ8NH67
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR52I2
DMDM Disease mutations143502
Blocks (Seattle)OR52I2
SuperfamilyQ8NH67
Human Protein Atlas [tissue]ENSG00000226288-OR52I2 [tissue]
Peptide AtlasQ8NH67
HPRD15016
IPIIPI00456621   
Protein Interaction databases
DIP (DOE-UCLA)Q8NH67
IntAct (EBI)Q8NH67
FunCoupENSG00000226288
BioGRIDOR52I2
STRING (EMBL)OR52I2
ZODIACOR52I2
Ontologies - Pathways
QuickGOQ8NH67
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR52I2
Atlas of Cancer Signalling NetworkOR52I2
Wikipedia pathwaysOR52I2
Orthology - Evolution
OrthoDB143502
GeneTree (enSembl)ENSG00000226288
Phylogenetic Trees/Animal Genes : TreeFamOR52I2
HOVERGENQ8NH67
HOGENOMQ8NH67
Homologs : HomoloGeneOR52I2
Homology/Alignments : Family Browser (UCSC)OR52I2
Gene fusions - Rearrangements
Tumor Fusion PortalOR52I2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR52I2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR52I2
dbVarOR52I2
ClinVarOR52I2
1000_GenomesOR52I2 
Exome Variant ServerOR52I2
ExAC (Exome Aggregation Consortium)ENSG00000226288
GNOMAD BrowserENSG00000226288
Genetic variants : HAPMAP143502
Genomic Variants (DGV)OR52I2 [DGVbeta]
DECIPHEROR52I2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR52I2 
Mutations
ICGC Data PortalOR52I2 
TCGA Data PortalOR52I2 
Broad Tumor PortalOR52I2
OASIS PortalOR52I2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR52I2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR52I2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR52I2
DgiDB (Drug Gene Interaction Database)OR52I2
DoCM (Curated mutations)OR52I2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR52I2 (select a term)
intoGenOR52I2
Cancer3DOR52I2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR52I2
MedgenOR52I2
Genetic Testing Registry OR52I2
NextProtQ8NH67 [Medical]
TSGene143502
GENETestsOR52I2
Target ValidationOR52I2
Huge Navigator OR52I2 [HugePedia]
snp3D : Map Gene to Disease143502
BioCentury BCIQOR52I2
ClinGenOR52I2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD143502
Chemical/Pharm GKB GenePA32413
Clinical trialOR52I2
Miscellaneous
canSAR (ICR)OR52I2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR52I2
EVEXOR52I2
GoPubMedOR52I2
iHOPOR52I2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:24:37 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.