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OR52J3 (olfactory receptor family 52 subfamily J member 3)

Identity

Alias_namesolfactory receptor, family 52, subfamily J, member 3
Other aliasOR11-32
HGNC (Hugo) OR52J3
LocusID (NCBI) 119679
Atlas_Id 71388
Location 4a hraf../Bands/11p15.html TARGET=Bands>11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 5046526 and ends at 5047461 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

8Td WIDTH=15%>IntAct (EBI)
Nomenclature
HGNC (Hugo)OR52J3   14799
Cards
Entrez_Gene (NCBI)OR52J3  119679  olfactory receptor family 52 subfamily J member 3
AliasesOR11-32
GeneCards (Weizmann)OR52J3
Ensembl hg19 (Hinxton)ENSG00000205495 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205495 [Gene_View]  chr11:5046526-5047461 [Contig_View]  OR52J3 [Vega]
ICGC DataPortalENSG00000205495
TCGA cBioPortalOR52J3
AceView (NCBI)OR52J3
Genatlas (Paris)OR52J3
WikiGenes119679
SOURCE (Princeton)OR52J3
Genetics Home Reference (NIH)OR52J3
Genomic and cartography
GoldenPath hg38 (UCSC)OR52J3  -     chr11:5046526-5047461 +  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR52J3  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblOR52J3 - 11p15.4 [CytoView hg19]  OR52J3 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIOR52J3 [Mapview hg19]  OR52J3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001001916
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR52J3
Cluster EST : UnigeneHs.553558 [ NCBI ]
CGAP (NCI)Hs.553558
Alternative Splicing GalleryENSG00000205495
Gene ExpressionOR52J3 [ NCBI-GEO ]   OR52J3 [ EBI - ARRAY_EXPRESS ]   OR52J3 [ SEEK ]   OR52J3 [ MEM ]
Gene Expression Viewer (FireBrowse)OR52J3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)119679
GTEX Portal (Tissue expression)OR52J3
Human Protein AtlasENSG00000205495-OR52J3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NH60   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NH60  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NH60
Splice isoforms : SwissVarQ8NH60
PhosPhoSitePlusQ8NH60
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR52J3
DMDM Disease mutations119679
Blocks (Seattle)OR52J3
SuperfamilyQ8NH60
Human Protein Atlas [tissue]ENSG00000205495-OR52J3 [tissue]
Peptide AtlasQ8NH60
HPRD15017
IPIIPI00303683   
Protein Interaction databases
DIP (DOE-UCLA)Q8NH60
Q8NH60
FunCoupENSG00000205495
BioGRIDOR52J3
STRING (EMBL)OR52J3
ZODIACOR52J3
Ontologies - Pathways
QuickGOQ8NH60
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR52J3
Atlas of Cancer Signalling NetworkOR52J3
Wikipedia pathwaysOR52J3
Orthology - Evolution
OrthoDB119679
GeneTree (enSembl)ENSG00000205495
Phylogenetic Trees/Animal Genes : TreeFamOR52J3
HOVERGENQ8NH60
HOGENOMQ8NH60
Homologs : HomoloGeneOR52J3
Homology/Alignments : Family Browser (UCSC)OR52J3
Gene fusions - Rearrangements
tumnr Fusion PortalOR52J3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR52J3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR52J3
dbVarOR52J3
ClinVarOR52J3
1000_GenomesOR52J3 
Exome Variant ServerOR52J3
ExAC (Exome Aggregation Consortium)ENSG00000205495
GNOMAD BrowserENSG00000205495
Genetic variants : HAPMAP119679
Genomic Variants (DGV)OR52J3 [DGVbeta]
DECIPHEROR52J3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR52J3 
Mutations
ICGC Data PortalOR52J3 
TCGA Data PortalOR52J3 
Broad Tumor PortalOR52J3
OASIS PortalOR52J3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR52J3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR52J3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR52J3
DgiDB (Drug Gene Interaction Database)OR52J3
DoCM (Curated mutations)OR52J3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR52J3 (select a term)
intoGenOR52J3
Cancer3DOR52J3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR52J3
MedgenOR52J3
Genetic Testing Registry OR52J3
NextProtQ8NH60 [Medical]
TSGene119679
GENETestsOR52J3
Target ValidationOR52J3
Huge Navigator OR52J3 [HugePedia]
snp3D : Map Gene to Disease119679
BioCentury BCIQOR52J3
ClinGenOR52J3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD119679
Chemical/Pharm GKB GenePA32416
Clinical trialOR52J3
Miscellaneous
canSAR (ICR)OR52J3 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR52J3
EVEXOR52J3
GoPubMedOR52J3
iHOPOR52J3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:24:37 CET 2017

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