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OR52K1 (olfactory receptor family 52 subfamily K member 1)

Identity

Alias (NCBI)OR11-8
HGNC (Hugo) OR52K1
HGNC Previous nameolfactory receptor, family 52, subfamily K, member 1
LocusID (NCBI) 390036
Atlas_Id 71389
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 4488879 and ends at 4489908 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)OR52K1   15222
Cards
Entrez_Gene (NCBI)OR52K1    olfactory receptor family 52 subfamily K member 1
AliasesOR11-8
GeneCards (Weizmann)OR52K1
Ensembl hg19 (Hinxton)ENSG00000196778 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196778 [Gene_View]  ENSG00000196778 [Sequence]  chr11:4488879-4489908 [Contig_View]  OR52K1 [Vega]
ICGC DataPortalENSG00000196778
TCGA cBioPortalOR52K1
AceView (NCBI)OR52K1
Genatlas (Paris)OR52K1
SOURCE (Princeton)OR52K1
Genetics Home Reference (NIH)OR52K1
Genomic and cartography
GoldenPath hg38 (UCSC)OR52K1  -     chr11:4488879-4489908 +  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR52K1  -     11p15.4   [Description]    (hg19-Feb_2009)
GoldenPathOR52K1 - 11p15.4 [CytoView hg19]  OR52K1 - 11p15.4 [CytoView hg38]
ImmunoBaseENSG00000196778
genome Data Viewer NCBIOR52K1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC137056 BC137059
RefSeq transcript (Entrez)NM_001005171
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR52K1
Alternative Splicing GalleryENSG00000196778
Gene ExpressionOR52K1 [ NCBI-GEO ]   OR52K1 [ EBI - ARRAY_EXPRESS ]   OR52K1 [ SEEK ]   OR52K1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR52K1 [ Firebrowse - Broad ]
GenevisibleExpression of OR52K1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390036
GTEX Portal (Tissue expression)OR52K1
Human Protein AtlasENSG00000196778-OR52K1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGK4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGK4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGK4
Splice isoforms : SwissVarQ8NGK4
PhosPhoSitePlusQ8NGK4
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)7tm_4 (PF13853)   
Domain families : Pfam (NCBI)pfam13853   
Conserved Domain (NCBI)OR52K1
Blocks (Seattle)OR52K1
SuperfamilyQ8NGK4
Human Protein Atlas [tissue]ENSG00000196778-OR52K1 [tissue]
Peptide AtlasQ8NGK4
HPRD15018
IPIIPI00169043   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGK4
IntAct (EBI)Q8NGK4
BioGRIDOR52K1
STRING (EMBL)OR52K1
ZODIACOR52K1
Ontologies - Pathways
QuickGOQ8NGK4
Ontology : AmiGOG protein-coupled receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG protein-coupled receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR52K1
Atlas of Cancer Signalling NetworkOR52K1
Wikipedia pathwaysOR52K1
Orthology - Evolution
OrthoDB390036
GeneTree (enSembl)ENSG00000196778
Phylogenetic Trees/Animal Genes : TreeFamOR52K1
HOGENOMQ8NGK4
Homologs : HomoloGeneOR52K1
Homology/Alignments : Family Browser (UCSC)OR52K1
Gene fusions - Rearrangements
Fusion : QuiverOR52K1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR52K1 [hg38]
dbVarOR52K1
ClinVarOR52K1
MonarchOR52K1
1000_GenomesOR52K1 
Exome Variant ServerOR52K1
GNOMAD BrowserENSG00000196778
Varsome BrowserOR52K1
Genomic Variants (DGV)OR52K1 [DGVbeta]
DECIPHEROR52K1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR52K1 
Mutations
ICGC Data PortalOR52K1 
TCGA Data PortalOR52K1 
Broad Tumor PortalOR52K1
OASIS PortalOR52K1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR52K1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DOR52K1
Mutations and Diseases : HGMDOR52K1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR52K1
DgiDB (Drug Gene Interaction Database)OR52K1
DoCM (Curated mutations)OR52K1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR52K1 (select a term)
intoGenOR52K1
Cancer3DOR52K1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR52K1
MedgenOR52K1
Genetic Testing Registry OR52K1
NextProtQ8NGK4 [Medical]
GENETestsOR52K1
Target ValidationOR52K1
Huge Navigator OR52K1 [HugePedia]
ClinGenOR52K1
Clinical trials, drugs, therapy
MyCancerGenomeOR52K1
Protein Interactions : CTD
Pharm GKB GenePA32417
Clinical trialOR52K1
Miscellaneous
canSAR (ICR)OR52K1 (select the gene name)
HarmonizomeOR52K1
DataMed IndexOR52K1
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR52K1
EVEXOR52K1
GoPubMedOR52K1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:20:55 CET 2020

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