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OR52K2 (olfactory receptor family 52 subfamily K member 2)

Identity

Alias_namesolfactory receptor, family 52, subfamily K, member 2
Other aliasOR11-7
HGNC (Hugo) OR52K2
LocusID (NCBI) 119774
Atlas_Id 71390
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 4449295 and ends at 4450361 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR52K2   15223
Cards
Entrez_Gene (NCBI)OR52K2  119774  olfactory receptor family 52 subfamily K member 2
AliasesOR11-7
GeneCards (Weizmann)OR52K2
Ensembl hg19 (Hinxton)ENSG00000181963 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181963 [Gene_View]  chr11:4449295-4450361 [Contig_View]  OR52K2 [Vega]
ICGC DataPortalENSG00000181963
TCGA cBioPortalOR52K2
AceView (NCBI)OR52K2
Genatlas (Paris)OR52K2
WikiGenes119774
SOURCE (Princeton)OR52K2
Genetics Home Reference (NIH)OR52K2
Genomic and cartography
GoldenPath hg38 (UCSC)OR52K2  -     chr11:4449295-4450361 +  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR52K2  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblOR52K2 - 11p15.4 [CytoView hg19]  OR52K2 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIOR52K2 [Mapview hg19]  OR52K2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC137247 BC137248
RefSeq transcript (Entrez)NM_001005172
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR52K2
Cluster EST : UnigeneHs.553568 [ NCBI ]
CGAP (NCI)Hs.553568
Alternative Splicing GalleryENSG00000181963
Gene ExpressionOR52K2 [ NCBI-GEO ]   OR52K2 [ EBI - ARRAY_EXPRESS ]   OR52K2 [ SEEK ]   OR52K2 [ MEM ]
Gene Expression Viewer (FireBrowse)OR52K2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)119774
GTEX Portal (Tissue expression)OR52K2
Human Protein AtlasENSG00000181963-OR52K2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGK3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGK3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGK3
Splice isoforms : SwissVarQ8NGK3
PhosPhoSitePlusQ8NGK3
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR52K2
DMDM Disease mutations119774
Blocks (Seattle)OR52K2
SuperfamilyQ8NGK3
Human Protein Atlas [tissue]ENSG00000181963-OR52K2 [tissue]
Peptide AtlasQ8NGK3
HPRD15019
IPIIPI00303484   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGK3
IntAct (EBI)Q8NGK3
FunCoupENSG00000181963
BioGRIDOR52K2
STRING (EMBL)OR52K2
ZODIACOR52K2
Ontologies - Pathways
QuickGOQ8NGK3
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR52K2
Atlas of Cancer Signalling NetworkOR52K2
Wikipedia pathwaysOR52K2
Orthology - Evolution
OrthoDB119774
GeneTree (enSembl)ENSG00000181963
Phylogenetic Trees/Animal Genes : TreeFamOR52K2
HOVERGENQ8NGK3
HOGENOMQ8NGK3
Homologs : HomoloGeneOR52K2
Homology/Alignments : Family Browser (UCSC)OR52K2
Gene fusions - Rearrangements
Tumor Fusion PortalOR52K2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR52K2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR52K2
dbVarOR52K2
ClinVarOR52K2
1000_GenomesOR52K2 
Exome Variant ServerOR52K2
ExAC (Exome Aggregation Consortium)ENSG00000181963
GNOMAD BrowserENSG00000181963
Genetic variants : HAPMAP119774
Genomic Variants (DGV)OR52K2 [DGVbeta]
DECIPHEROR52K2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR52K2 
Mutations
ICGC Data PortalOR52K2 
TCGA Data PortalOR52K2 
Broad Tumor PortalOR52K2
OASIS PortalOR52K2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR52K2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR52K2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR52K2
DgiDB (Drug Gene Interaction Database)OR52K2
DoCM (Curated mutations)OR52K2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR52K2 (select a term)
intoGenOR52K2
Cancer3DOR52K2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR52K2
MedgenOR52K2
Genetic Testing Registry OR52K2
NextProtQ8NGK3 [Medical]
TSGene119774
GENETestsOR52K2
Target ValidationOR52K2
Huge Navigator OR52K2 [HugePedia]
snp3D : Map Gene to Disease119774
BioCentury BCIQOR52K2
ClinGenOR52K2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD119774
Chemical/Pharm GKB GenePA32418
Clinical trialOR52K2
Miscellaneous
canSAR (ICR)OR52K2 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR52K2
EVEXOR52K2
GoPubMedOR52K2
iHOPOR52K2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:24:38 CET 2017

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