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OR52L1 (olfactory receptor family 52 subfamily L member 1)

Identity

Alias_namesolfactory receptor, family 52, subfamily L, member 1
Other aliasOR11-50
HGNC (Hugo) OR52L1
LocusID (NCBI) 338751
Atlas_Id 71392
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 5985892 and ends at 5986985 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR52L1   14785
Cards
Entrez_Gene (NCBI)OR52L1  338751  olfactory receptor family 52 subfamily L member 1
AliasesOR11-50
GeneCards (Weizmann)OR52L1
Ensembl hg19 (Hinxton)ENSG00000183313 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183313 [Gene_View]  chr11:5985892-5986985 [Contig_View]  OR52L1 [Vega]
ICGC DataPortalENSG00000183313
TCGA cBioPortalOR52L1
AceView (NCBI)OR52L1
Genatlas (Paris)OR52L1
WikiGenes338751
SOURCE (Princeton)OR52L1
Genetics Home Reference (NIH)OR52L1
Genomic and cartography
GoldenPath hg38 (UCSC)OR52L1  -     chr11:5985892-5986985 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR52L1  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblOR52L1 - 11p15.4 [CytoView hg19]  OR52L1 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIOR52L1 [Mapview hg19]  OR52L1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC137343
RefSeq transcript (Entrez)NM_001005173
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR52L1
Cluster EST : UnigeneHs.553703 [ NCBI ]
CGAP (NCI)Hs.553703
Alternative Splicing GalleryENSG00000183313
Gene ExpressionOR52L1 [ NCBI-GEO ]   OR52L1 [ EBI - ARRAY_EXPRESS ]   OR52L1 [ SEEK ]   OR52L1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR52L1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)338751
GTEX Portal (Tissue expression)OR52L1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGH7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGH7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGH7
Splice isoforms : SwissVarQ8NGH7
PhosPhoSitePlusQ8NGH7
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR52L1
DMDM Disease mutations338751
Blocks (Seattle)OR52L1
SuperfamilyQ8NGH7
Human Protein AtlasENSG00000183313
Peptide AtlasQ8NGH7
HPRD17744
IPIIPI00169020   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGH7
IntAct (EBI)Q8NGH7
FunCoupENSG00000183313
BioGRIDOR52L1
STRING (EMBL)OR52L1
ZODIACOR52L1
Ontologies - Pathways
QuickGOQ8NGH7
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR52L1
Atlas of Cancer Signalling NetworkOR52L1
Wikipedia pathwaysOR52L1
Orthology - Evolution
OrthoDB338751
GeneTree (enSembl)ENSG00000183313
Phylogenetic Trees/Animal Genes : TreeFamOR52L1
HOVERGENQ8NGH7
HOGENOMQ8NGH7
Homologs : HomoloGeneOR52L1
Homology/Alignments : Family Browser (UCSC)OR52L1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR52L1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR52L1
dbVarOR52L1
ClinVarOR52L1
1000_GenomesOR52L1 
Exome Variant ServerOR52L1
ExAC (Exome Aggregation Consortium)OR52L1 (select the gene name)
Genetic variants : HAPMAP338751
Genomic Variants (DGV)OR52L1 [DGVbeta]
DECIPHEROR52L1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR52L1 
Mutations
ICGC Data PortalOR52L1 
TCGA Data PortalOR52L1 
Broad Tumor PortalOR52L1
OASIS PortalOR52L1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR52L1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR52L1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR52L1
DgiDB (Drug Gene Interaction Database)OR52L1
DoCM (Curated mutations)OR52L1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR52L1 (select a term)
intoGenOR52L1
Cancer3DOR52L1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR52L1
Genetic Testing Registry OR52L1
NextProtQ8NGH7 [Medical]
TSGene338751
GENETestsOR52L1
Huge Navigator OR52L1 [HugePedia]
snp3D : Map Gene to Disease338751
BioCentury BCIQOR52L1
ClinGenOR52L1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD338751
Chemical/Pharm GKB GenePA32420
Clinical trialOR52L1
Miscellaneous
canSAR (ICR)OR52L1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR52L1
EVEXOR52L1
GoPubMedOR52L1
iHOPOR52L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:46:51 CEST 2017

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