Atlas of Genetics and Cytogenetics in Oncology and Haematology

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OR52M1 (olfactory receptor family 52 subfamily M member 1)

Identity

Alias_namesOR52M1P
olfactory receptor, family 52, subfamily M, member 1 pseudogene
olfactory receptor, family 52, subfamily M, member 1
Other aliasOR11-11
OR52M3P
HGNC (Hugo) OR52M1
LocusID (NCBI) 119772
Atlas_Id 71393
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 4545191 and ends at 4546144 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)OR52M1   15225
Cards
Entrez_Gene (NCBI)OR52M1  119772  olfactory receptor family 52 subfamily M member 1
AliasesOR11-11; OR52M1P; OR52M3P
GeneCards (Weizmann)OR52M1
Ensembl hg19 (Hinxton)ENSG00000197790 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197790 [Gene_View]  ENSG00000197790 [Sequence]  chr11:4545191-4546144 [Contig_View]  OR52M1 [Vega]
ICGC DataPortalENSG00000197790
TCGA cBioPortalOR52M1
AceView (NCBI)OR52M1
Genatlas (Paris)OR52M1
WikiGenes119772
SOURCE (Princeton)OR52M1
Genetics Home Reference (NIH)OR52M1
Genomic and cartography
GoldenPath hg38 (UCSC)OR52M1  -     chr11:4545191-4546144 +  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR52M1  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblOR52M1 - 11p15.4 [CytoView hg19]  OR52M1 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIOR52M1 [Mapview hg19]  OR52M1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC146424
RefSeq transcript (Entrez)NM_001004137
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR52M1
Cluster EST : UnigeneHs.553567 [ NCBI ]
CGAP (NCI)Hs.553567
Alternative Splicing GalleryENSG00000197790
Gene ExpressionOR52M1 [ NCBI-GEO ]   OR52M1 [ EBI - ARRAY_EXPRESS ]   OR52M1 [ SEEK ]   OR52M1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR52M1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)119772
GTEX Portal (Tissue expression)OR52M1
Human Protein AtlasENSG00000197790-OR52M1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGK5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGK5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGK5
Splice isoforms : SwissVarQ8NGK5
PhosPhoSitePlusQ8NGK5
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR52M1
DMDM Disease mutations119772
Blocks (Seattle)OR52M1
SuperfamilyQ8NGK5
Human Protein Atlas [tissue]ENSG00000197790-OR52M1 [tissue]
Peptide AtlasQ8NGK5
HPRD15020
IPIIPI00303486   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGK5
IntAct (EBI)Q8NGK5
FunCoupENSG00000197790
BioGRIDOR52M1
STRING (EMBL)OR52M1
ZODIACOR52M1
Ontologies - Pathways
QuickGOQ8NGK5
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR52M1
Atlas of Cancer Signalling NetworkOR52M1
Wikipedia pathwaysOR52M1
Orthology - Evolution
OrthoDB119772
GeneTree (enSembl)ENSG00000197790
Phylogenetic Trees/Animal Genes : TreeFamOR52M1
HOGENOMQ8NGK5
Homologs : HomoloGeneOR52M1
Homology/Alignments : Family Browser (UCSC)OR52M1
Gene fusions - Rearrangements
Fusion : QuiverOR52M1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR52M1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR52M1
dbVarOR52M1
ClinVarOR52M1
1000_GenomesOR52M1 
Exome Variant ServerOR52M1
ExAC (Exome Aggregation Consortium)ENSG00000197790
GNOMAD BrowserENSG00000197790
Varsome BrowserOR52M1
Genetic variants : HAPMAP119772
Genomic Variants (DGV)OR52M1 [DGVbeta]
DECIPHEROR52M1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR52M1 
Mutations
ICGC Data PortalOR52M1 
TCGA Data PortalOR52M1 
Broad Tumor PortalOR52M1
OASIS PortalOR52M1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR52M1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR52M1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR52M1
DgiDB (Drug Gene Interaction Database)OR52M1
DoCM (Curated mutations)OR52M1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR52M1 (select a term)
intoGenOR52M1
Cancer3DOR52M1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR52M1
MedgenOR52M1
Genetic Testing Registry OR52M1
NextProtQ8NGK5 [Medical]
TSGene119772
GENETestsOR52M1
Target ValidationOR52M1
Huge Navigator OR52M1 [HugePedia]
snp3D : Map Gene to Disease119772
BioCentury BCIQOR52M1
ClinGenOR52M1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD119772
Chemical/Pharm GKB GenePA32422
Clinical trialOR52M1
Miscellaneous
canSAR (ICR)OR52M1 (select the gene name)
DataMed IndexOR52M1
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR52M1
EVEXOR52M1
GoPubMedOR52M1
iHOPOR52M1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Feb 14 15:52:29 CET 2019
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