Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OR52N1 (olfactory receptor family 52 subfamily N member 1)

Identity

Alias_namesolfactory receptor
Other aliasOR11-61
HGNC (Hugo) OR52N1
LocusID (NCBI) 79473
Atlas_Id 53668
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 5809084 and ends at 5810046 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR52N1   14853
Cards
Entrez_Gene (NCBI)OR52N1  79473  olfactory receptor family 52 subfamily N member 1
AliasesOR11-61
GeneCards (Weizmann)OR52N1
Ensembl hg19 (Hinxton)ENSG00000181001 [Gene_View]  chr11:5809084-5810046 [Contig_View]  OR52N1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000181001 [Gene_View]  chr11:5809084-5810046 [Contig_View]  OR52N1 [Vega]
ICGC DataPortalENSG00000181001
TCGA cBioPortalOR52N1
AceView (NCBI)OR52N1
Genatlas (Paris)OR52N1
WikiGenes79473
SOURCE (Princeton)OR52N1
Genetics Home Reference (NIH)OR52N1
Genomic and cartography
GoldenPath hg19 (UCSC)OR52N1  -     chr11:5809084-5810046 -  11p15.4   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR52N1  -     11p15.4   [Description]    (hg38-Dec_2013)
EnsemblOR52N1 - 11p15.4 [CytoView hg19]  OR52N1 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIOR52N1 [Mapview hg19]  OR52N1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001001913
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)OR52N1
Cluster EST : UnigeneHs.690209 [ NCBI ]
CGAP (NCI)Hs.690209
Alternative Splicing GalleryENSG00000181001
Gene ExpressionOR52N1 [ NCBI-GEO ]   OR52N1 [ EBI - ARRAY_EXPRESS ]   OR52N1 [ SEEK ]   OR52N1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR52N1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79473
GTEX Portal (Tissue expression)OR52N1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NH53   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NH53  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NH53
Splice isoforms : SwissVarQ8NH53
PhosPhoSitePlusQ8NH53
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR52N1
DMDM Disease mutations79473
Blocks (Seattle)OR52N1
SuperfamilyQ8NH53
Human Protein AtlasENSG00000181001
Peptide AtlasQ8NH53
HPRD15021
IPIIPI00169156   
Protein Interaction databases
DIP (DOE-UCLA)Q8NH53
IntAct (EBI)Q8NH53
FunCoupENSG00000181001
BioGRIDOR52N1
STRING (EMBL)OR52N1
ZODIACOR52N1
Ontologies - Pathways
QuickGOQ8NH53
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR52N1
Atlas of Cancer Signalling NetworkOR52N1
Wikipedia pathwaysOR52N1
Orthology - Evolution
OrthoDB79473
GeneTree (enSembl)ENSG00000181001
Phylogenetic Trees/Animal Genes : TreeFamOR52N1
HOVERGENQ8NH53
HOGENOMQ8NH53
Homologs : HomoloGeneOR52N1
Homology/Alignments : Family Browser (UCSC)OR52N1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR52N1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR52N1
dbVarOR52N1
ClinVarOR52N1
1000_GenomesOR52N1 
Exome Variant ServerOR52N1
ExAC (Exome Aggregation Consortium)OR52N1 (select the gene name)
Genetic variants : HAPMAP79473
Genomic Variants (DGV)OR52N1 [DGVbeta]
DECIPHER (Syndromes)11:5809084-5810046  ENSG00000181001
CONAN: Copy Number AnalysisOR52N1 
Mutations
ICGC Data PortalOR52N1 
TCGA Data PortalOR52N1 
Broad Tumor PortalOR52N1
OASIS PortalOR52N1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR52N1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR52N1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR52N1
DgiDB (Drug Gene Interaction Database)OR52N1
DoCM (Curated mutations)OR52N1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR52N1 (select a term)
intoGenOR52N1
Cancer3DOR52N1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR52N1
Genetic Testing Registry OR52N1
NextProtQ8NH53 [Medical]
TSGene79473
GENETestsOR52N1
Huge Navigator OR52N1 [HugePedia]
snp3D : Map Gene to Disease79473
BioCentury BCIQOR52N1
ClinGenOR52N1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79473
Chemical/Pharm GKB GenePA32425
Clinical trialOR52N1
Miscellaneous
canSAR (ICR)OR52N1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR52N1
EVEXOR52N1
GoPubMedOR52N1
iHOPOR52N1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:19:53 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.