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OR52N4 (olfactory receptor family 52 subfamily N member 4 (gene/pseudogene))

Identity

Alias_namesolfactory receptor, family 52, subfamily N, member 4
olfactory receptor, family 52, subfamily N, member 4 (gene/pseudogene)
Other aliasOR11-64
HGNC (Hugo) OR52N4
LocusID (NCBI) 390072
Atlas_Id 71395
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 5754693 and ends at 5755729 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR52N4   15230
Cards
Entrez_Gene (NCBI)OR52N4  390072  olfactory receptor family 52 subfamily N member 4 (gene/pseudogene)
AliasesOR11-64
GeneCards (Weizmann)OR52N4
Ensembl hg19 (Hinxton)ENSG00000181074 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181074 [Gene_View]  chr11:5754693-5755729 [Contig_View]  OR52N4 [Vega]
ICGC DataPortalENSG00000181074
TCGA cBioPortalOR52N4
AceView (NCBI)OR52N4
Genatlas (Paris)OR52N4
WikiGenes390072
SOURCE (Princeton)OR52N4
Genetics Home Reference (NIH)OR52N4
Genomic and cartography
GoldenPath hg38 (UCSC)OR52N4  -     chr11:5754693-5755729 +  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR52N4  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblOR52N4 - 11p15.4 [CytoView hg19]  OR52N4 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIOR52N4 [Mapview hg19]  OR52N4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC137035 BC137036
RefSeq transcript (Entrez)NM_001005175
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR52N4
Cluster EST : UnigeneHs.553735 [ NCBI ]
CGAP (NCI)Hs.553735
Alternative Splicing GalleryENSG00000181074
Gene ExpressionOR52N4 [ NCBI-GEO ]   OR52N4 [ EBI - ARRAY_EXPRESS ]   OR52N4 [ SEEK ]   OR52N4 [ MEM ]
Gene Expression Viewer (FireBrowse)OR52N4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390072
GTEX Portal (Tissue expression)OR52N4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGI2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGI2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGI2
Splice isoforms : SwissVarQ8NGI2
PhosPhoSitePlusQ8NGI2
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR52N4
DMDM Disease mutations390072
Blocks (Seattle)OR52N4
SuperfamilyQ8NGI2
Human Protein AtlasENSG00000181074
Peptide AtlasQ8NGI2
HPRD15022
IPIIPI00375707   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGI2
IntAct (EBI)Q8NGI2
FunCoupENSG00000181074
BioGRIDOR52N4
STRING (EMBL)OR52N4
ZODIACOR52N4
Ontologies - Pathways
QuickGOQ8NGI2
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR52N4
Atlas of Cancer Signalling NetworkOR52N4
Wikipedia pathwaysOR52N4
Orthology - Evolution
OrthoDB390072
GeneTree (enSembl)ENSG00000181074
Phylogenetic Trees/Animal Genes : TreeFamOR52N4
HOVERGENQ8NGI2
HOGENOMQ8NGI2
Homologs : HomoloGeneOR52N4
Homology/Alignments : Family Browser (UCSC)OR52N4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR52N4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR52N4
dbVarOR52N4
ClinVarOR52N4
1000_GenomesOR52N4 
Exome Variant ServerOR52N4
ExAC (Exome Aggregation Consortium)OR52N4 (select the gene name)
Genetic variants : HAPMAP390072
Genomic Variants (DGV)OR52N4 [DGVbeta]
DECIPHEROR52N4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR52N4 
Mutations
ICGC Data PortalOR52N4 
TCGA Data PortalOR52N4 
Broad Tumor PortalOR52N4
OASIS PortalOR52N4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR52N4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR52N4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR52N4
DgiDB (Drug Gene Interaction Database)OR52N4
DoCM (Curated mutations)OR52N4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR52N4 (select a term)
intoGenOR52N4
Cancer3DOR52N4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR52N4
Genetic Testing Registry OR52N4
NextProtQ8NGI2 [Medical]
TSGene390072
GENETestsOR52N4
Target ValidationOR52N4
Huge Navigator OR52N4 [HugePedia]
snp3D : Map Gene to Disease390072
BioCentury BCIQOR52N4
ClinGenOR52N4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390072
Chemical/Pharm GKB GenePA32428
Clinical trialOR52N4
Miscellaneous
canSAR (ICR)OR52N4 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR52N4
EVEXOR52N4
GoPubMedOR52N4
iHOPOR52N4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:34:36 CEST 2017

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