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OR52N5 (olfactory receptor family 52 subfamily N member 5)

Identity

Alias_namesolfactory receptor, family 52, subfamily N, member 5
Alias_symbol (synonym)OR52N5Q
Other aliasOR11-62
HGNC (Hugo) OR52N5
LocusID (NCBI) 390075
Atlas_Id 71396
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 5777634 and ends at 5778667 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR52N5   15231
Cards
Entrez_Gene (NCBI)OR52N5  390075  olfactory receptor family 52 subfamily N member 5
AliasesOR11-62; OR52N5Q
GeneCards (Weizmann)OR52N5
Ensembl hg19 (Hinxton)ENSG00000181009 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181009 [Gene_View]  chr11:5777634-5778667 [Contig_View]  OR52N5 [Vega]
ICGC DataPortalENSG00000181009
TCGA cBioPortalOR52N5
AceView (NCBI)OR52N5
Genatlas (Paris)OR52N5
WikiGenes390075
SOURCE (Princeton)OR52N5
Genetics Home Reference (NIH)OR52N5
Genomic and cartography
GoldenPath hg38 (UCSC)OR52N5  -     chr11:5777634-5778667 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR52N5  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblOR52N5 - 11p15.4 [CytoView hg19]  OR52N5 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIOR52N5 [Mapview hg19]  OR52N5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136979 BC136981
RefSeq transcript (Entrez)NM_001001922
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR52N5
Cluster EST : UnigeneHs.690207 [ NCBI ]
CGAP (NCI)Hs.690207
Alternative Splicing GalleryENSG00000181009
Gene ExpressionOR52N5 [ NCBI-GEO ]   OR52N5 [ EBI - ARRAY_EXPRESS ]   OR52N5 [ SEEK ]   OR52N5 [ MEM ]
Gene Expression Viewer (FireBrowse)OR52N5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390075
GTEX Portal (Tissue expression)OR52N5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NH56   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NH56  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NH56
Splice isoforms : SwissVarQ8NH56
PhosPhoSitePlusQ8NH56
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR52N5
DMDM Disease mutations390075
Blocks (Seattle)OR52N5
SuperfamilyQ8NH56
Human Protein AtlasENSG00000181009
Peptide AtlasQ8NH56
HPRD15023
IPIIPI00303677   
Protein Interaction databases
DIP (DOE-UCLA)Q8NH56
IntAct (EBI)Q8NH56
FunCoupENSG00000181009
BioGRIDOR52N5
STRING (EMBL)OR52N5
ZODIACOR52N5
Ontologies - Pathways
QuickGOQ8NH56
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR52N5
Atlas of Cancer Signalling NetworkOR52N5
Wikipedia pathwaysOR52N5
Orthology - Evolution
OrthoDB390075
GeneTree (enSembl)ENSG00000181009
Phylogenetic Trees/Animal Genes : TreeFamOR52N5
HOVERGENQ8NH56
HOGENOMQ8NH56
Homologs : HomoloGeneOR52N5
Homology/Alignments : Family Browser (UCSC)OR52N5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR52N5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR52N5
dbVarOR52N5
ClinVarOR52N5
1000_GenomesOR52N5 
Exome Variant ServerOR52N5
ExAC (Exome Aggregation Consortium)OR52N5 (select the gene name)
Genetic variants : HAPMAP390075
Genomic Variants (DGV)OR52N5 [DGVbeta]
DECIPHEROR52N5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR52N5 
Mutations
ICGC Data PortalOR52N5 
TCGA Data PortalOR52N5 
Broad Tumor PortalOR52N5
OASIS PortalOR52N5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR52N5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR52N5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR52N5
DgiDB (Drug Gene Interaction Database)OR52N5
DoCM (Curated mutations)OR52N5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR52N5 (select a term)
intoGenOR52N5
Cancer3DOR52N5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR52N5
Genetic Testing Registry OR52N5
NextProtQ8NH56 [Medical]
TSGene390075
GENETestsOR52N5
Target ValidationOR52N5
Huge Navigator OR52N5 [HugePedia]
snp3D : Map Gene to Disease390075
BioCentury BCIQOR52N5
ClinGenOR52N5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390075
Chemical/Pharm GKB GenePA32429
Clinical trialOR52N5
Miscellaneous
canSAR (ICR)OR52N5 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR52N5
EVEXOR52N5
GoPubMedOR52N5
iHOPOR52N5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:34:36 CEST 2017

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