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OR52R1 (olfactory receptor family 52 subfamily R member 1 (gene/pseudogene))

Identity

Alias_namesolfactory receptor, family 52, subfamily R, member 1 (gene/pseudogene)
Other aliasOR11-22
HGNC (Hugo) OR52R1
LocusID (NCBI) 119695
Atlas_Id 71397
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 4803433 and ends at 4804380 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR52R1   15235
Cards
Entrez_Gene (NCBI)OR52R1  119695  olfactory receptor family 52 subfamily R member 1 (gene/pseudogene)
AliasesOR11-22
GeneCards (Weizmann)OR52R1
Ensembl hg19 (Hinxton)ENSG00000176937 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176937 [Gene_View]  chr11:4803433-4804380 [Contig_View]  OR52R1 [Vega]
ICGC DataPortalENSG00000176937
TCGA cBioPortalOR52R1
AceView (NCBI)OR52R1
Genatlas (Paris)OR52R1
WikiGenes119695
SOURCE (Princeton)OR52R1
Genetics Home Reference (NIH)OR52R1
Genomic and cartography
GoldenPath hg38 (UCSC)OR52R1  -     chr11:4803433-4804380 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR52R1  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblOR52R1 - 11p15.4 [CytoView hg19]  OR52R1 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIOR52R1 [Mapview hg19]  OR52R1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001005177
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR52R1
Cluster EST : UnigeneHs.553563 [ NCBI ]
CGAP (NCI)Hs.553563
Alternative Splicing GalleryENSG00000176937
Gene ExpressionOR52R1 [ NCBI-GEO ]   OR52R1 [ EBI - ARRAY_EXPRESS ]   OR52R1 [ SEEK ]   OR52R1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR52R1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)119695
GTEX Portal (Tissue expression)OR52R1
Human Protein AtlasENSG00000176937-OR52R1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NGF1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NGF1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NGF1
Splice isoforms : SwissVarQ8NGF1
PhosPhoSitePlusQ8NGF1
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR52R1
DMDM Disease mutations119695
Blocks (Seattle)OR52R1
SuperfamilyQ8NGF1
Human Protein Atlas [tissue]ENSG00000176937-OR52R1 [tissue]
Peptide AtlasQ8NGF1
HPRD15024
IPIIPI00303389   
Protein Interaction databases
DIP (DOE-UCLA)Q8NGF1
IntAct (EBI)Q8NGF1
FunCoupENSG00000176937
BioGRIDOR52R1
STRING (EMBL)OR52R1
ZODIACOR52R1
Ontologies - Pathways
QuickGOQ8NGF1
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR52R1
Atlas of Cancer Signalling NetworkOR52R1
Wikipedia pathwaysOR52R1
Orthology - Evolution
OrthoDB119695
GeneTree (enSembl)ENSG00000176937
Phylogenetic Trees/Animal Genes : TreeFamOR52R1
HOVERGENQ8NGF1
HOGENOMQ8NGF1
Homologs : HomoloGeneOR52R1
Homology/Alignments : Family Browser (UCSC)OR52R1
Gene fusions - Rearrangements
Tumor Fusion PortalOR52R1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR52R1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR52R1
dbVarOR52R1
ClinVarOR52R1
1000_GenomesOR52R1 
Exome Variant ServerOR52R1
ExAC (Exome Aggregation Consortium)ENSG00000176937
GNOMAD BrowserENSG00000176937
Genetic variants : HAPMAP119695
Genomic Variants (DGV)OR52R1 [DGVbeta]
DECIPHEROR52R1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR52R1 
Mutations
ICGC Data PortalOR52R1 
TCGA Data PortalOR52R1 
Broad Tumor PortalOR52R1
OASIS PortalOR52R1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR52R1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR52R1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR52R1
DgiDB (Drug Gene Interaction Database)OR52R1
DoCM (Curated mutations)OR52R1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR52R1 (select a term)
intoGenOR52R1
Cancer3DOR52R1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR52R1
MedgenOR52R1
Genetic Testing Registry OR52R1
NextProtQ8NGF1 [Medical]
TSGene119695
GENETestsOR52R1
Target ValidationOR52R1
Huge Navigator OR52R1 [HugePedia]
snp3D : Map Gene to Disease119695
BioCentury BCIQOR52R1
ClinGenOR52R1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD119695
Chemical/Pharm GKB GenePA32433
Clinical trialOR52R1
Miscellaneous
canSAR (ICR)OR52R1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR52R1
EVEXOR52R1
GoPubMedOR52R1
iHOPOR52R1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:24:39 CET 2017

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