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OR52W1 (olfactory receptor family 52 subfamily W member 1)

Identity

Alias_namesOR52W1P
olfactory receptor, family 52, subfamily W, member 1
Other aliasOR11-71
HGNC (Hugo) OR52W1
LocusID (NCBI) 120787
Atlas_Id 71398
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 6199224 and ends at 6200186 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR52W1   15239
Cards
Entrez_Gene (NCBI)OR52W1  120787  olfactory receptor family 52 subfamily W member 1
AliasesOR11-71; OR52W1P
GeneCards (Weizmann)OR52W1
Ensembl hg19 (Hinxton)ENSG00000175485 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175485 [Gene_View]  chr11:6199224-6200186 [Contig_View]  OR52W1 [Vega]
ICGC DataPortalENSG00000175485
TCGA cBioPortalOR52W1
AceView (NCBI)OR52W1
Genatlas (Paris)OR52W1
WikiGenes120787
SOURCE (Princeton)OR52W1
Genetics Home Reference (NIH)OR52W1
Genomic and cartography
GoldenPath hg38 (UCSC)OR52W1  -     chr11:6199224-6200186 +  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR52W1  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblOR52W1 - 11p15.4 [CytoView hg19]  OR52W1 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIOR52W1 [Mapview hg19]  OR52W1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC137225
RefSeq transcript (Entrez)NM_001005178
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR52W1
Cluster EST : UnigeneHs.553570 [ NCBI ]
CGAP (NCI)Hs.553570
Alternative Splicing GalleryENSG00000175485
Gene ExpressionOR52W1 [ NCBI-GEO ]   OR52W1 [ EBI - ARRAY_EXPRESS ]   OR52W1 [ SEEK ]   OR52W1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR52W1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)120787
GTEX Portal (Tissue expression)OR52W1
Human Protein AtlasENSG00000175485-OR52W1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6IF63   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6IF63  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6IF63
Splice isoforms : SwissVarQ6IF63
PhosPhoSitePlusQ6IF63
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR52W1
DMDM Disease mutations120787
Blocks (Seattle)OR52W1
SuperfamilyQ6IF63
Human Protein Atlas [tissue]ENSG00000175485-OR52W1 [tissue]
Peptide AtlasQ6IF63
HPRD15025
IPIIPI00169198   
Protein Interaction databases
DIP (DOE-UCLA)Q6IF63
IntAct (EBI)Q6IF63
FunCoupENSG00000175485
BioGRIDOR52W1
STRING (EMBL)OR52W1
ZODIACOR52W1
Ontologies - Pathways
QuickGOQ6IF63
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR52W1
Atlas of Cancer Signalling NetworkOR52W1
Wikipedia pathwaysOR52W1
Orthology - Evolution
OrthoDB120787
GeneTree (enSembl)ENSG00000175485
Phylogenetic Trees/Animal Genes : TreeFamOR52W1
HOVERGENQ6IF63
HOGENOMQ6IF63
Homologs : HomoloGeneOR52W1
Homology/Alignments : Family Browser (UCSC)OR52W1
Gene fusions - Rearrangements
Tumor Fusion PortalOR52W1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR52W1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR52W1
dbVarOR52W1
ClinVarOR52W1
1000_GenomesOR52W1 
Exome Variant ServerOR52W1
ExAC (Exome Aggregation Consortium)ENSG00000175485
GNOMAD BrowserENSG00000175485
Genetic variants : HAPMAP120787
Genomic Variants (DGV)OR52W1 [DGVbeta]
DECIPHEROR52W1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR52W1 
Mutations
ICGC Data PortalOR52W1 
TCGA Data PortalOR52W1 
Broad Tumor PortalOR52W1
OASIS PortalOR52W1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR52W1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR52W1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR52W1
DgiDB (Drug Gene Interaction Database)OR52W1
DoCM (Curated mutations)OR52W1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR52W1 (select a term)
intoGenOR52W1
Cancer3DOR52W1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR52W1
MedgenOR52W1
Genetic Testing Registry OR52W1
NextProtQ6IF63 [Medical]
TSGene120787
GENETestsOR52W1
Target ValidationOR52W1
Huge Navigator OR52W1 [HugePedia]
snp3D : Map Gene to Disease120787
BioCentury BCIQOR52W1
ClinGenOR52W1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD120787
Chemical/Pharm GKB GenePA32438
Clinical trialOR52W1
Miscellaneous
canSAR (ICR)OR52W1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR52W1
EVEXOR52W1
GoPubMedOR52W1
iHOPOR52W1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:24:39 CET 2017

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