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OR52Z1 (olfactory receptor family 52 subfamily Z member 1 (gene/pseudogene))

Identity

Alias_namesOR52Z1P
olfactory receptor, family 52, subfamily Z, member 1 pseudogene
olfactory receptor, family 52, subfamily Z, member 1 (gene/pseudogene)
Other alias
HGNC (Hugo) OR52Z1
LocusID (NCBI) 283110
Atlas_Id 79554
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 5177621 and ends at 5178711 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR52Z1   19596
Cards
Entrez_Gene (NCBI)OR52Z1  283110  olfactory receptor family 52 subfamily Z member 1 (gene/pseudogene)
AliasesOR52Z1P
GeneCards (Weizmann)OR52Z1
Ensembl hg19 (Hinxton)ENSG00000176748 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176748 [Gene_View]  chr11:5177621-5178711 [Contig_View]  OR52Z1 [Vega]
ICGC DataPortalENSG00000176748
TCGA cBioPortalOR52Z1
AceView (NCBI)OR52Z1
Genatlas (Paris)OR52Z1
WikiGenes283110
SOURCE (Princeton)OR52Z1
Genetics Home Reference (NIH)OR52Z1
Genomic and cartography
GoldenPath hg38 (UCSC)OR52Z1  -     chr11:5177621-5178711 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR52Z1  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblOR52Z1 - 11p15.4 [CytoView hg19]  OR52Z1 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIOR52Z1 [Mapview hg19]  OR52Z1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001348257
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR52Z1
Alternative Splicing GalleryENSG00000176748
Gene ExpressionOR52Z1 [ NCBI-GEO ]   OR52Z1 [ EBI - ARRAY_EXPRESS ]   OR52Z1 [ SEEK ]   OR52Z1 [ MEM ]
Gene Expression Viewer (FireBrowse)OR52Z1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283110
GTEX Portal (Tissue expression)OR52Z1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C646   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C646  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C646
Splice isoforms : SwissVarP0C646
PhosPhoSitePlusP0C646
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)7TM_GPCR_Srsx (SM01381)  
Conserved Domain (NCBI)OR52Z1
DMDM Disease mutations283110
Blocks (Seattle)OR52Z1
SuperfamilyP0C646
Human Protein AtlasENSG00000176748
Peptide AtlasP0C646
IPIIPI00022766   
Protein Interaction databases
DIP (DOE-UCLA)P0C646
IntAct (EBI)P0C646
FunCoupENSG00000176748
BioGRIDOR52Z1
STRING (EMBL)OR52Z1
ZODIACOR52Z1
Ontologies - Pathways
QuickGOP0C646
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
NDEx NetworkOR52Z1
Atlas of Cancer Signalling NetworkOR52Z1
Wikipedia pathwaysOR52Z1
Orthology - Evolution
OrthoDB283110
GeneTree (enSembl)ENSG00000176748
Phylogenetic Trees/Animal Genes : TreeFamOR52Z1
HOVERGENP0C646
HOGENOMP0C646
Homologs : HomoloGeneOR52Z1
Homology/Alignments : Family Browser (UCSC)OR52Z1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR52Z1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR52Z1
dbVarOR52Z1
ClinVarOR52Z1
1000_GenomesOR52Z1 
Exome Variant ServerOR52Z1
ExAC (Exome Aggregation Consortium)OR52Z1 (select the gene name)
Genetic variants : HAPMAP283110
Genomic Variants (DGV)OR52Z1 [DGVbeta]
DECIPHEROR52Z1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR52Z1 
Mutations
ICGC Data PortalOR52Z1 
TCGA Data PortalOR52Z1 
Broad Tumor PortalOR52Z1
OASIS PortalOR52Z1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDOR52Z1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR52Z1
DgiDB (Drug Gene Interaction Database)OR52Z1
DoCM (Curated mutations)OR52Z1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR52Z1 (select a term)
intoGenOR52Z1
Cancer3DOR52Z1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR52Z1
Genetic Testing Registry OR52Z1
NextProtP0C646 [Medical]
TSGene283110
GENETestsOR52Z1
Target ValidationOR52Z1
Huge Navigator OR52Z1 [HugePedia]
snp3D : Map Gene to Disease283110
BioCentury BCIQOR52Z1
ClinGenOR52Z1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283110
Chemical/Pharm GKB GenePA134896034
Clinical trialOR52Z1
Miscellaneous
canSAR (ICR)OR52Z1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR52Z1
EVEXOR52Z1
GoPubMedOR52Z1
iHOPOR52Z1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:33:20 CEST 2017

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